Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1785g00001 ATGCGTCGTAATAATATCGAAGATAGGTTACTCTCTTGGAGATCCAAGCTCCTGCGATCGTTTAGGGCCCTGTTGGGTTGTGGGCCATCTTTTGGTCCAAGACCGTTGGATCAGGGAGGTAAAGCTTCAAGCTCTTCCGGTCTGAACTCGTTGGATCAGGGTTTCAATAGCATCCAAAGCAGCACGTCATCTCCGCGGATCTGTAAATACGATGTGTTTATCAGTTTCAGAGGTAGTGATACTCGCAACTCTTTTGTTGACCATCTTTTTGCTCATCTCTCCAGGAAAGGTCTTTTTGCCTTTAAGGATGACAAACGGCTCGGGAAAGGAGAACCCATTAAATCACAGCTTTTACAAGCAATTGAAGATTCACGGGTTTCTATCGTTGTCTTTTCCCCAGATTATGCTTCTTCAACATGGTGTTTGGATGAAATGGCTTCTATAAATGCATGCCGTAAAAATTTGAAACAAACTGTTTTCCCAATTTTCTATGATGTGGATCCATCTCATGTACGAAAACAGAATGGGGTGTACGAGGATGCCTTTCTCTTACACACTAAGAGATTTGAACAAGATGAAGCCAAGGTTGATCGATGGGAGGAAGCTATGTCGGATTTGGCAGGATTAGCTGGTTGGGATGTCAGGAATAAGCCAGAGTTTGAAGAAATTGAAAAAATTCTCCGCGAGGTAATAAAAACATTGGGTCATAAATTCTCAGGGTTTATGCATGATGTTATTGGGATACAACCTCATGTAGCAACATTAGAAAGCTTTTTAAAATTAAGCTCAGAGGAGGATAATTTTCGAGTTTTGGGAATTTGGGGGATGAGTGGAATAGGAAAAACAACTCTTGCTACTGTCTTGTATGACAGAATCTCTTATCAGTTTGACTTCTGCTGTTTTATTGAGGATGTAAGCAAAATTTATAGAGATGGTGGTGCTACTGATTTGCAGAAACATATTCTTCGTCAAACTCTAAAAGAAGAAGATCTAGACAAATACGATCCTCTTGAAATATCCGGAATTGTAACAGATAGGCTACACAAGATAAAGGTCCTTGTAGTTCTTGACAATGTTAATCAATTAAAGCAATTACAGGAATTAGCTATAAATCCTAAATTGCTTCGCGCAGGAAGTAGAATGATTGTAGCCACTGAAGATGAACATATTCTTAAAGCGTATGGAGCAGATAAAGTTTATAAGGCTCAATTGATGAATGATAACGACGCTTGTCAACTTTTATGCAGAAAAGCCTTCAAAAGTGATGATTCAAGCAGCAATTTTGTAGAGCTGATCCCTGAGATAGTAAAATATGCTAAAGGCCTTCCATTAGTAATTAGTGTAGTGGGTTCTTTTTTGTGTACCCGAGATGCTCCCCACTGGATAGACGCCTTGGATAGATTGAAGAATAATCCAGACAAAGATATTATGGATGTGCTTCGTTTAAGTTTTGATGGACTACAACATGAGGAGAAGGAAATATTTCTACACATTGCTTGTTTCTTTAAAGGGGAGGGAGTGGATTATGTAAAACGAATTCTAGATGCTTGTGGATTACACCCTCACATTGGAATACAACGTCTCATTGAGACATCACTCATAATCATTAAAAATGAGAAAATTCATATGCATGAAATGTTGCAAGAATTGGGAAAGCATATTGTTCGGCAACAATTTCCCCAAGAACCAGGATCATGGAGTAGATTGTGGCGTTACCTGGATTTCCATCATGTCTCGATGACAAAAACGGGAACAGACAAGGTTAAAGCTATAGTTCTAGATCAAAAAGATGTTTCCGAATGTCCTCAGGCGATTGCAGGTGCGAGTGCGGAAGGATTGTCGAAGATGACAAGCCTTAGATTGCTCATATTAAATCATATGAATTTTTCAGGAGACCTCAATTTTCTTCCTAACAGCCTGCAATGTCTTATGTGGCGCGATTACCCTTTCACTTCTTTGCCATCCAATTTTGAGCCCTATGGTCTTGTTGAATTGAATATGCGTAATAGCAGCATCCAACGATTGTGGGACGGCCGCAAGGATCTTCCCTTTTTAAAAAGGATAGATTTGAGCAACTCTAAAGATCTTATGGAAACTCCAATCTTTGATGGGACCCCAAATCTTGAGCGGTTAGATCTCACAGGATGTACAAACCTACACCATGTCCATCAATCAATTGGAATTTTGAGTAAACTTGTTTTCTTGAGTTTGCAAAACTGTAGCAGTCTGGTTGTCTTTGATTTTGGCTGTTACACTAATTTAAGTTCTCTGAAAGTTCTGGACCTCTCTGGTTGCGCAAAACTTGAAAAAATGCCAGATTTTACAAGGGCATTGAATCTCGAGTACCTTGATATTGATCAATGTACTAGCTTATCTACGGTTCATCCATCAATTGGGACTCGTACAAAGCTTAGATTCTTAAGTTGCAGAGACTGCACTAGTCTTGAAGTTAACAAAGTGTTAGTTGTTGAAAAGATATTTTCATCAATGGCTTAG 2496 0.3922 MRRNNIEDRLLSWRSKLLRSFRALLGCGPSFGPRPLDQGGKASSSSGLNSLDQGFNSIQSSTSSPRICKYDVFISFRGSDTRNSFVDHLFAHLSRKGLFAFKDDKRLGKGEPIKSQLLQAIEDSRVSIVVFSPDYASSTWCLDEMASINACRKNLKQTVFPIFYDVDPSHVRKQNGVYEDAFLLHTKRFEQDEAKVDRWEEAMSDLAGLAGWDVRNKPEFEEIEKILREVIKTLGHKFSGFMHDVIGIQPHVATLESFLKLSSEEDNFRVLGIWGMSGIGKTTLATVLYDRISYQFDFCCFIEDVSKIYRDGGATDLQKHILRQTLKEEDLDKYDPLEISGIVTDRLHKIKVLVVLDNVNQLKQLQELAINPKLLRAGSRMIVATEDEHILKAYGADKVYKAQLMNDNDACQLLCRKAFKSDDSSSNFVELIPEIVKYAKGLPLVISVVGSFLCTRDAPHWIDALDRLKNNPDKDIMDVLRLSFDGLQHEEKEIFLHIACFFKGEGVDYVKRILDACGLHPHIGIQRLIETSLIIIKNEKIHMHEMLQELGKHIVRQQFPQEPGSWSRLWRYLDFHHVSMTKTGTDKVKAIVLDQKDVSECPQAIAGASAEGLSKMTSLRLLILNHMNFSGDLNFLPNSLQCLMWRDYPFTSLPSNFEPYGLVELNMRNSSIQRLWDGRKDLPFLKRIDLSNSKDLMETPIFDGTPNLERLDLTGCTNLHHVHQSIGILSKLVFLSLQNCSSLVVFDFGCYTNLSSLKVLDLSGCAKLEKMPDFTRALNLEYLDIDQCTSLSTVHPSIGTRTKLRFLSCRDCTSLEVNKVLVVEKIFSSMA 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1785g00001 831 SMART till_3 69 209 IPR000157 GO:0007165
Gabi1785g00001 831 Pfam NB-ARC domain 261 472 IPR002182 GO:0043531
Gabi1785g00001 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 498 IPR027417 -
Gabi1785g00001 831 ProSiteProfiles TIR domain profile. 68 234 IPR000157 GO:0007165
Gabi1785g00001 831 SUPERFAMILY L domain-like 558 815 - -
Gabi1785g00001 831 Gene3D Ribonuclease Inhibitor 553 748 IPR032675 -
Gabi1785g00001 831 Gene3D Ribonuclease Inhibitor 749 824 IPR032675 -
Gabi1785g00001 831 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 70 743 IPR044974 GO:0006952
Gabi1785g00001 831 PRINTS Disease resistance protein signature 439 453 - -
Gabi1785g00001 831 PRINTS Disease resistance protein signature 270 285 - -
Gabi1785g00001 831 PRINTS Disease resistance protein signature 346 360 - -
Gabi1785g00001 831 PRINTS Disease resistance protein signature 752 768 - -
Gabi1785g00001 831 Gene3D - 241 399 IPR027417 -
Gabi1785g00001 831 Gene3D - 67 240 IPR035897 -
Gabi1785g00001 831 Pfam Leucine Rich Repeat 662 678 IPR011713 -
Gabi1785g00001 831 Pfam TIR domain 69 236 IPR000157 GO:0007165
Gabi1785g00001 831 Gene3D - 405 488 IPR042197 -
Gabi1785g00001 831 SUPERFAMILY "Winged helix" DNA-binding domain 475 576 IPR036390 -
Gabi1785g00001 831 FunFam Disease resistance protein (TIR-NBS-LRR class) 66 236 - -
Gabi1785g00001 831 SUPERFAMILY Toll/Interleukin receptor TIR domain 60 212 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1785g00001 Gabi-Chr1785 19559 28007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1785g00001 44 816 WRKY Transcription Factor Family AT4G12020 30.061 4.31e-87 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1785g00001 - - vvo:131643801 999.193