Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1784g00020 ATGGAAAGCATGCTTAAGTTTGTTCCTCTCATTTGTTTTATGACCATGCTTAAATTTGTATTAGGAAATGCAGCAGCTTATCCTGAAGGTGCTGGTGGCATGAATTTCAAGGGCATAATAGGAGCTATTGCAGACCAAAATTCCCGCAATGGTAAAGAGGAGATAGTGGCTATTGAGATGGCATTGGAGGATTTCTATCATTACAGCAATCAAAGGTTTGTTCTGCACATAAGGAACTCTCGAGGGGATCCCCTTAAGGCTGCTCTTGCAGCTAGAGATCTTATTAATGAAATGCACGTGCAAGCAATTATAGGACCGCAAACATGGGAAGAGACATCTTTAGTGGCTGAGGTTTGTAGCCAAAGCATGACGCCAGTTCTATCTCTAGCTGATGCAACTCCAAAGTGGTCAACTTTGAAATGGCCCTTCCTGGTGCAAGCCTTACCTAGTCAAATTAAGCATATGAAAGTAGTAGCTGCTATTGTTCAGTCCTGGGAATGGTACAGTGTCAACATAATATATGAAGATTGGGCTGCTTCATCCACACAAGTTTTATCTCATCTCTATAGAGCCCTCAGTGAAGCAGGTGTAAGTATAAGTAATCTTTTAGCTATCCCACCTTTTGTTTCCTCTTCATTGTCCCAAGAACTGGAGAAGCTTAGAGAAGGGCAATGTAGAGTCTTTGTTGTTATTTCTTCCCTCCCGTTGGCCATAAACCTGTTTGAAACTGCAAATAAAATGAATATGATAGAGAAAGATTCTGTGTGGATCATAACTGATCCTTTTACAAGCCTTGTCCATTCCTTGAATGCATCCACTATATCTTCAATGCAAGGCATCCTTGGAATCAAGAGCTACATCCCAGAAACAGGACACCAGTTTAAGGACTTCTACCATAAATTTGGCCAAAAGTTTAGCTCAGAGAACCCTTGGGAATTCAACAATGAGCCTGGGATATTTGCAGCACATGCCTATGATGCTGCATGGACTGTGGCTCTAGCCATGACCCAAGACAACGGTAAAGGAGGCCAAGTTTTGCTAGATAAGATTTTGCTTAATAGTTTTATTGGCTTAAGTGGAAAAATTCAGTTCACTGACCAAAAGTTAGCTCCTTCACATACTTTTCAGATCATCAATGTGATAGGGAATGGTTACAAGGAAATTGGATTCTGGTCAGATGGACTAGGTTTCTCAAATAGTATTGGCCAAAATGCTACTTATAGTTGTTCAATGAAGGAACTGGGACAACTTTTATGGCCAGGAAGACCTTGGGACACTCCAAGAGGATGGGCCCTGCCTACAAGTGATAAACCACTAAGAGTTGGGGTCCCTGCTTTGGCCACATTGAAACAATTTATAAATATAACTCAAGATCATTCTGAAAATACTACCTCCTTCCAGGGATTTACTATTGATCTTTTTAGAGCAACTGTGGAGTTGTTGCCCTACCATTTGCCATACAAATTATATGCTTTCAATGACACATATGATAATTTGGTGAAGCAAGTTTATTTAAAGAATTTCGATGCAGCGATTGATGTAACAATAATTTCATATCGATATCAGTATGTTGAATTCACTCTGCCTTACACTGATCCGGGAGTGGTGATGGTAGTGCCCATTAAGTCAAAAGCAGGACATAGAGCTTGGTTATTCGTGAAGCCATTTACAAAGACCATGTGGATTCTAATAGCAGCCATGATTATCTACAATGGATTTGTTCTATGGATGTTAGAGAGACACCATTGGCCTGAACTTAAGGGTTCCATGCTCAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTCATCAGCTTTAATGACTTAGGTGGTAAGTTACACCACAGTTTATCAAGGATGGCTATGGTGGTGTGGCTATTTGTAGCACTCATCATAACACAGTCTTACACAGCTAACCTTACCAGCATGCTAACTGTTGAAAGGTTTGAACCCTCAGTGGATAATGTTGATCAGCTACGGAATGGCAATGCTGTGGTTGGATACAGTACAGGATCCTTCTTGAAAAATTATCTCCAGGAAGTGTTACACTTCCAACCTGCAAACATCAAGCAATTTAGCTCACTTGAAGAGTTTGCAGAAGCTCTCAGAAGGAAAGAAATAGCAGCTGCATTTCTTGAAGTTCCTGGGGCCAAAATTTTCCTTTCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTATGTATAAAATTGGAGGATTTGGTTTTGCATTTCCAAGGGGGTCTCCATTTCTTCCAAGTGTAAACAAAGCACTGCTAGGTTTGTTTGAAAATGGCAAGCTTCGTGAATTAGAGAACAAAATGCTTGCATTAGAGAAATGTGAAGACACAGAACCAGAGGGAGATACTGCAAGTCTCAGTCCCAATAGCTTCTGGGCCCTTATCACAATGACAGCAGGCACATCAACAATTTCTCTCTTTGTTTACATTATTGGTATGAATTATTCAAACCGTGAAGAGAAAACATTATGGAGGCTAATGAAGGTAATGATTCAGCAATGTGGATATGCAAAGAGACGATTCTGCAGAAGAGAAAGTGATGTTGCAGAAAGTTCTATGGACTCTCCAAATGCACATGATATGCCAACTCAAGTTTGA 2622 0.4062 MESMLKFVPLICFMTMLKFVLGNAAAYPEGAGGMNFKGIIGAIADQNSRNGKEEIVAIEMALEDFYHYSNQRFVLHIRNSRGDPLKAALAARDLINEMHVQAIIGPQTWEETSLVAEVCSQSMTPVLSLADATPKWSTLKWPFLVQALPSQIKHMKVVAAIVQSWEWYSVNIIYEDWAASSTQVLSHLYRALSEAGVSISNLLAIPPFVSSSLSQELEKLREGQCRVFVVISSLPLAINLFETANKMNMIEKDSVWIITDPFTSLVHSLNASTISSMQGILGIKSYIPETGHQFKDFYHKFGQKFSSENPWEFNNEPGIFAAHAYDAAWTVALAMTQDNGKGGQVLLDKILLNSFIGLSGKIQFTDQKLAPSHTFQIINVIGNGYKEIGFWSDGLGFSNSIGQNATYSCSMKELGQLLWPGRPWDTPRGWALPTSDKPLRVGVPALATLKQFINITQDHSENTTSFQGFTIDLFRATVELLPYHLPYKLYAFNDTYDNLVKQVYLKNFDAAIDVTIISYRYQYVEFTLPYTDPGVVMVVPIKSKAGHRAWLFVKPFTKTMWILIAAMIIYNGFVLWMLERHHWPELKGSMLNQTGTMAWLALTPLISFNDLGGKLHHSLSRMAMVVWLFVALIITQSYTANLTSMLTVERFEPSVDNVDQLRNGNAVVGYSTGSFLKNYLQEVLHFQPANIKQFSSLEEFAEALRRKEIAAAFLEVPGAKIFLSKYCKEFIQAGPMYKIGGFGFAFPRGSPFLPSVNKALLGLFENGKLRELENKMLALEKCEDTEPEGDTASLSPNSFWALITMTAGTSTISLFVYIIGMNYSNREEKTLWRLMKVMIQQCGYAKRRFCRRESDVAESSMDSPNAHDMPTQV 873
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi1784g00020 873 FunFam Glutamate receptor 154 315 - -
Gabi1784g00020 873 Gene3D - 549 685 - -
Gabi1784g00020 873 Gene3D - 46 372 - -
Gabi1784g00020 873 FunFam Glutamate receptor 549 689 - -
Gabi1784g00020 873 Pfam Receptor family ligand binding region 57 382 IPR001828 -
Gabi1784g00020 873 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 826 IPR015683 -
Gabi1784g00020 873 CDD PBP1_GABAb_receptor_plant 40 401 IPR044440 -
Gabi1784g00020 873 SUPERFAMILY Periplasmic binding protein-like I 40 430 IPR028082 -
Gabi1784g00020 873 CDD GluR_Plant 437 777 - -
Gabi1784g00020 873 Gene3D - 150 392 - -
Gabi1784g00020 873 FunFam Glutamate receptor 434 548 - -
Gabi1784g00020 873 SMART GluR_14 438 779 IPR001320 GO:0015276|GO:0016020
Gabi1784g00020 873 Pfam Bacterial extracellular solute-binding proteins, family 3 463 775 IPR001638 -
Gabi1784g00020 873 Gene3D - 448 548 - -
Gabi1784g00020 873 SUPERFAMILY Periplasmic binding protein-like II 416 775 - -
Gabi1784g00020 873 Pfam Ligand-gated ion channel 776 807 IPR001320 GO:0015276|GO:0016020
Gabi1784g00020 873 PIRSF IGluLR_plant 2 871 IPR017103 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi1784g00020 Gabi-Chr1784 237098 245662 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1784g00020 40 841 Ion Channels AT2G29110 32.660 6.96e-142 443
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1784g00020 - - gmx:100799573 1168.3