Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1784g00019 ATGGCACAGTTACCTCCTAAAATACCAACCATACCCCAAAATTGGCCATCTTTTCCTTACCAAAGGGTATCCACAATGTCAAACTTCAACCCCACTATCACAACCGCCACGACAACCGCCACCACAACTGTCACCAATGCTACCACTCCTCACCATTATCAACATCAACCACCTTCATCACCGCCGCCACAACAACAACAACAACAACAACAATTGCCATCATGGGTCGACGAGTTCCTCGACTTCTCATCGGCACGGCGAGGATCTCACCGGCGTTCCGCCAGCGACTCCATCACCTTCATCGAAACGCCATTCCTAGAAGAATGCCGAAGCGGGTTCGATAGGTTGGACGATGACCAGCTGATTTCAATGTTCTCCGACGACATTGCCACCGTTTCTCTGCCGCCTCCGCCGCCGTCGTCCACCTCCAACCCTTCCTCGCCGTCCTCCGACCAGAATAGCAATAACGATGAGAAGCCAATGGCAATGGCGTTGGACGTTCATCATCATCAGCTGAAGCCCAAGAACGAAGTTGTTGAAGATGAAAGCTCATGCAAGAATGAGACGGCGGCGCCGCCACCCTCCGCCGCCACCAGCTGCACTGAAACCATTTTCGATCCCAAGAGGGTCAAAAGAATTTTGGCTAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGAAAGCTACAATACATTTCTGAGCTTGAAAGGAGCGTAACAACTTTGCAGACGGAGGTTTCCGCATTGTCCCCACGAGTTGCGTTCTTGGACCATCAACGTTTGATTCTCAATGTCGACAATAGTGCCTTGAAGCAACGGATTGCTGCTTTGGCACAAGACAAGATTTTCAAAGACGCTCATCAAGAAGCATTAAAGAAGGAAATAGAAAGACTGAGACAAATCTATCACCAACAGAATCTACACAAGATGAATAACTCAGTCAACAACAATGGTCTTTCTCTTCAATCCCCACCAACATCACAGCCACAACCATCACTGCATCCACACCCTCTACATCAGCATCTAACAGTTTCTCAACCCTTGGGAATGGGATGCAAGGAGAAGGAGCAGCTCCTTAGTTGA 1080 0.4926 MAQLPPKIPTIPQNWPSFPYQRVSTMSNFNPTITTATTTATTTVTNATTPHHYQHQPPSSPPPQQQQQQQQLPSWVDEFLDFSSARRGSHRRSASDSITFIETPFLEECRSGFDRLDDDQLISMFSDDIATVSLPPPPPSSTSNPSSPSSDQNSNNDEKPMAMALDVHHHQLKPKNEVVEDESSCKNETAAPPPSAATSCTETIFDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQIYHQQNLHKMNNSVNNNGLSLQSPPTSQPQPSLHPHPLHQHLTVSQPLGMGCKEKEQLLS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1784g00019 359 Pfam bZIP transcription factor 208 253 IPR004827 GO:0003700|GO:0006355
Gabi1784g00019 359 MobiDBLite consensus disorder prediction 175 199 - -
Gabi1784g00019 359 PANTHER BASIC LEUCINE ZIPPER 34 1 330 - -
Gabi1784g00019 359 SMART brlzneu 204 268 IPR004827 GO:0003700|GO:0006355
Gabi1784g00019 359 SUPERFAMILY Leucine zipper domain 208 262 IPR046347 GO:0003700|GO:0006355
Gabi1784g00019 359 MobiDBLite consensus disorder prediction 309 326 - -
Gabi1784g00019 359 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 211 226 IPR004827 GO:0003700|GO:0006355
Gabi1784g00019 359 MobiDBLite consensus disorder prediction 48 73 - -
Gabi1784g00019 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 206 258 IPR004827 GO:0003700|GO:0006355
Gabi1784g00019 359 Gene3D - 207 306 - -
Gabi1784g00019 359 CDD bZIP_plant_RF2 209 259 IPR044759 GO:0003700|GO:0006355
Gabi1784g00019 359 MobiDBLite consensus disorder prediction 129 158 - -
Gabi1784g00019 359 FunFam Basic leucine zipper 61 207 280 - -
Gabi1784g00019 359 MobiDBLite consensus disorder prediction 309 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1784g00019 Gabi-Chr1784 232410 235893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1784g00019 1 286 bZIP Transcription Factor Family AT3G58120 50.633 3.63e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi1784g00019 bZIP_1 1.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1784g00019 - - gmx:100820197 417.927