Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1784g00016 ATGGATCAGATGACGGATTCAGAAATGGATCAACAAAGGCAAGGCTATTTTCATTCTGAACCCTGTATCCTTTTGAGAGGCACCACCAGCATCTCACAGCCTAATATCCGCACCTTGGTGACAGCTTCAGGGAACACAACTAATGTTGATTCCCACTATTTACCAGATGCTTATGACAATGCTAGGGTGTATGGGGTTACACAATACAATGGCATTCCGCCTCAACATAATCTTGATATTGGTGTTGCAGCTGCAGCCAACTTATATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTCCCTTTGCCTCTAAATCACAGAGCTTCTGATCAGTTGCCAGGTCCAAGCACATTTGCAGCCTCTGGAGTTTCTTCGGATAATTTCGGAAGAAGCACCGGTTTCGTGGATGATGTCAGAGGTCCATACAAAAGGAAAAGTGCTGAAGGGATTAGAGGAAATTACCAGTATTTTAATGCTTCTGCTAGTTCTTCAATTGCTCCCCCTAATGCAAGACACACTGATGGGGTTGCTATGATGGATACTGCATCATTTTCATTCCGTGTCCCTTCACTTGTGGAAGTAGGACCACATGCTAGTGCATGGAGCAGATCAGGCGAGTCTATCATGGTGCATGACCATAACCATTTGATTCATGGAAACTATTTAGGGCAGCACTTTCAGCCAGCTCCTCCTCCCTGGTTGGACCCGCATTTGAATAGTAATAACAATGATGGCCATACCACAACCTGGAATCAGTCTCTTCCAATGCCTTATATACAAGCACCCAATGTAAACGGAAGTTCATTAGAGAATGCAAGTATGGGTTTGCAGAGATATCATGATCCAGCTGGCAATAGAAATGGCCTTAGGTTTCCTCCTCCTCCTCCTCCTGTCAACCAACAGCACCATAATTATCATCATCCAGCATTGCCCATGCAAGGAGTAAGAGGCCACGGTATCAACTTTCACCCTCCCGCAACTGCAGCTTCATTTAGAGTTCCAACAAATCCTTCACGAAGTGCTGCTATCCCTACACAGACTGGTTTTGAGATGGGCCCTAGGCATGTTGGCCCTGCTCCATCAGCAGCCCTCCGGATTTACCGACCTCATAGAGGCATCATGCCAGAGACAACTCTTGGCCATCGAAGTCTTCCGCGCGTGGGCTTTCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTGGTTGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTACGAGGATCTTCTTGCATTGGGTGAACGGATTGGCAATGTAAGCACTGGTTTATCTGAGGAGACAATTACAACTCAATTGAAGACAAAAACTTATTTAACGCTTGCTACTGCTATTAATCTTGAGGAGGCACCTTCTGATGATCAGGAAACTGATTCGTGTATAATATGCCAGGATGAATACAAGAACCAAGAGAAGATTGGAATACTTAGATGTGAGCATGAATACCATGCAGAGTGCTTAAGGAAATGGTTGCTTGTCAAAAATGTCTGCCCCATATGCAAATCAGAAGCTTTGAATCCTGGAAGGAGGGATGTGTAG 1584 0.4457 MDQMTDSEMDQQRQGYFHSEPCILLRGTTSISQPNIRTLVTASGNTTNVDSHYLPDAYDNARVYGVTQYNGIPPQHNLDIGVAAAANLYYSGMNPSSSTGVFPLPLNHRASDQLPGPSTFAASGVSSDNFGRSTGFVDDVRGPYKRKSAEGIRGNYQYFNASASSSIAPPNARHTDGVAMMDTASFSFRVPSLVEVGPHASAWSRSGESIMVHDHNHLIHGNYLGQHFQPAPPPWLDPHLNSNNNDGHTTTWNQSLPMPYIQAPNVNGSSLENASMGLQRYHDPAGNRNGLRFPPPPPPVNQQHHNYHHPALPMQGVRGHGINFHPPATAASFRVPTNPSRSAAIPTQTGFEMGPRHVGPAPSAALRIYRPHRGIMPETTLGHRSLPRVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITTQLKTKTYLTLATAINLEEAPSDDQETDSCIICQDEYKNQEKIGILRCEHEYHAECLRKWLLVKNVCPICKSEALNPGRRDV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1784g00016 527 ProSiteProfiles Zinc finger RING-type profile. 475 516 IPR001841 -
Gabi1784g00016 527 SUPERFAMILY RING/U-box 468 519 - -
Gabi1784g00016 527 Pfam Ring finger domain 473 516 IPR001841 -
Gabi1784g00016 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 437 520 IPR013083 -
Gabi1784g00016 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 125 520 IPR045191 GO:0061630
Gabi1784g00016 527 CDD RING-H2_RNF24-like 473 519 - -
Gabi1784g00016 527 SMART ring_2 475 515 IPR001841 -
Gabi1784g00016 527 FunFam E3 ubiquitin ligase BIG BROTHER 435 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1784g00016 Gabi-Chr1784 199281 203081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1784g00016 392 520 C3H Transcription Factor Family AT2G15530 44.444 5.28e-35 137