Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1784g00003 ATGGCTCCAAGGGATAGAACCACCGCACTCACCGGAATCAACCCCACCGCCGCCGCCGCACTAAACGCCGCCAAGGAGATCCGTTATAGAGGCGTCAGGAAGCGTCCGTGGGGGCGTTACGCCGCCGAGATCCGCGACCCCGGGAAAAAAACACGAGTCTGGCTCGGCACCTTCGACACAGCGGAGGAGGCTGCACGTGCTTATGATGCGGCGGCGCGTGATTTTCGCGGCGCAAAGGCTAAGACGAATTTTCCCACCCCTTCTGAGCTTGTAAATAACAACACCCGTAGCCCAAGCCAAAGCAGCACCCTCGAATCTTCCTCTCCACCGCCGCCGCCGCCGCTGGACCTCACCCTAACCCCACTCTCCGCCGTCAGCGCGTTGGCGTTCCCTGTGGCTCGTCCTGTGTTGTTCTTCGACGCTTTTGCACGTGCGGAGAGCATGCTGAGCGTAGGTCGCCGCGAGATGTGTGGGTTCGATCGTCCGGTTGCTGATTTCCGCACCGTCGCAGGCGGCGGCGGCGGCGGTGGCGGACAGAGTGATTCTGATTCTTCCTCCGTCGTGGATTACGAGCGTGTCCCGCGTCAGAGACTCTTAGATCTTGACCTTAATGTCCCTCCTCCGCCGGAGGTTGCCTGA 639 0.615 MAPRDRTTALTGINPTAAAALNAAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPTPSELVNNNTRSPSQSSTLESSSPPPPPPLDLTLTPLSAVSALAFPVARPVLFFDAFARAESMLSVGRREMCGFDRPVADFRTVAGGGGGGGGQSDSDSSSVVDYERVPRQRLLDLDLNVPPPPEVA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1784g00003 212 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Gabi1784g00003 212 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Gabi1784g00003 212 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Gabi1784g00003 212 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Gabi1784g00003 212 MobiDBLite consensus disorder prediction 170 191 - -
Gabi1784g00003 212 MobiDBLite consensus disorder prediction 85 104 - -
Gabi1784g00003 212 MobiDBLite consensus disorder prediction 81 116 - -
Gabi1784g00003 212 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Gabi1784g00003 212 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Gabi1784g00003 212 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Gabi1784g00003 212 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 152 - -
Gabi1784g00003 212 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Gabi1784g00003 212 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1784g00003 Gabi-Chr1784 75246 76617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1784g00003 9 140 AP2-EREBP Transcription Factor Family AT3G15210 61.589 4.08e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1784g00003 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1784g00003 K09286 - gmx:100500601 219.164