Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1784g00001 ATGGACAGCAGCTACTACAACCATCACAATCACCATCACCACCACCACCTTGACAACAATGATGCTCACTTGCCTCCTGGTTTTCGGTTCCACCCCACGGATGAGGAACTCATCACTTATTACCTTCTCAAGAAGGTTCTAGACAGTACCTTCACTGGAAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAACCATGGGAACTCCCTGAGAAAGCAAAGATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGATAGAAAGTACCCAACTGGCCTACGTACCAATAGGGCTACAGAAGCTGGTTATTGGAAAGCCACTGGAAAAGATAGAGAGATTTATAGCTCCAAAACTTGCTCCTTAGTTGGCATGAAGAAAACCCTTGTTTTCTACAGAGGAAGGGCTCCAAAAGGTGAAAAGAGTAACTGGGTTATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCATTATCTCTCTCGGAATTCCAAGGATGAGTGGGTCATATCTCGTGTGTTTCAAAAGAGCAACACCGGCGGCAGTGGTGGCTCCACCGTGTCTGCCACCACCGGCTCCAAGAAGACAAGAACAAGCACTACCAACTCTGCTTCCACGAGCCTCTGCCCTGAACCAAGTTCTCCATCTTCAGTTTATCTTCCACCTCTGCTTGACTCTTCTCCCTACACAAACACCAACAGAACAACCTTCAACGACCGTCAAAACTGTTCCTACGACAGCACCACCGAAAGGGAGCACGTGTCCTGTTTCTCCACAATATCTGCAGCCAACAATGCAAGCTTCGATCTTTCTCCTCCGCCACAAGCTTTCACTCTCGACCCTTTTGCTCGGTTCCAAAGAAATGTTGGTGTCTCTGCTTTTCCAAGCCTTAGGTCCCTCCAAGACAACCTTCAGCTGCCTTTCTTTTTCTCCCCGGTGGCTCAGCTTCATGGTGGTGGTTCCGGTGATATTCCCGGTTGCGGCGGCGCCGTCGTGAACTGGTCAATGCCGGAGGAGCAAAGGGTGGCTGATGGTGGTTCCGGCATGGCATTGGAATCATCCGAGCTTGATTGCATGTGGGGCTATTAG 1089 0.4931 MDSSYYNHHNHHHHHHLDNNDAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTGGSGGSTVSATTGSKKTRTSTTNSASTSLCPEPSSPSSVYLPPLLDSSPYTNTNRTTFNDRQNCSYDSTTEREHVSCFSTISAANNASFDLSPPPQAFTLDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSPVAQLHGGGSGDIPGCGGAVVNWSMPEEQRVADGGSGMALESSELDCMWGY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1784g00001 362 Pfam No apical meristem (NAM) protein 25 151 IPR003441 GO:0003677|GO:0006355
Gabi1784g00001 362 SUPERFAMILY NAC domain 15 176 IPR036093 GO:0003677|GO:0006355
Gabi1784g00001 362 ProSiteProfiles NAC domain profile. 24 176 IPR003441 GO:0003677|GO:0006355
Gabi1784g00001 362 Gene3D NAC domain 33 180 IPR036093 GO:0003677|GO:0006355
Gabi1784g00001 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 238 - -
Gabi1784g00001 362 MobiDBLite consensus disorder prediction 178 244 - -
Gabi1784g00001 362 FunFam NAC domain-containing protein 100-like 33 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1784g00001 Gabi-Chr1784 21287 23161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1784g00001 1 362 NAC Transcription Factor Family AT5G53950 51.372 7.18e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1784g00001 NAM 6.6e-41 No_clan