Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1783g00024 ATGGGCCATTGCTGCAGCAAAAACGTTGCCGTCAACAACGAAACAGTCTCCGCTGATCACGGCGGCCTGAAACCGCCTCATCATGCGGCGTCTCCGCCGCCTTCCGGCCACTCAGTCTCCGGCGCCAGCGATGCGACCCCCGGCAGGCACACTCCGGCGACCTCCTTCTCCACCAGCCCCTTCAACAGCCCTCTCCCGGCCGGCGTGGCTCCGTCGCCGGCTAAGACTCCGGGCAGGAAGTTCCGGTGGCCTCTTCCGCCACCGTCCCCGGCGAAGCCAATCATGTCGGCGTTGCTGCGGCGGCAGGGGAAGGCGAAACCGAAAGACGGGCCGATACCGGAGGAGCAAGGGGAAGGTGGTGAGGGAGAGAGGTCACTGGATAAGAGCTTTGGATATGGCAAGAATTTTGGGGCAAAGTTCGAGATTGGGAAGGAAGTGGGTCGTGGACATTTTGGTCACACTTGTTGGGCCAAAGGAAAAAAAGGAGAGCTCAAGGGACAATCAGTTGCTGTGAAAATCATATCCAAAGCTAAGATGACTTCAGCAATAGCAATTGAAGATGTACGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGACACAAGAATTTGGTCAAGTTTTATGATGCATTTGAGGATGTCAATAATGTCTACATAGTGATGGAGTTGTGCGAGGGTGGAGAACTACTTGACAGGATTCTAGATAGAGGTGGAAGATACCCAGAGGATGACGCGAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCCTTTTGTCATCTTCAAGGAGTTGTTCATCGCGATCTAAAACCAGAGAATTTTCTTTTTGTCTCAAAAGATGAGGATGCTGTGATGAAAGTTATTGATTTTGGTCTATCTGATTTTGTTAGACCAGATCAACGCCTCAATGATATTGTTGGCAGTGCCTACTACGTTGCACCTGAAGTACTCCATAGATCTTACAGTGTTGAAGGAGACTTATGGAGTATTGGAGTCATATCCTACATATTGTTATGCGGAAGTAGACCATTTTGGGCACGCACTGAATCAGGAATCTTCCGGTCTGTGTTAAGAGCAAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCGGAAGCTAAAGACTTTGTTAAGAGACTTTTGAACAAGGATCACAGGAAAAGGATGACTGCTGCTCAAGCTCTAGCTCATCCATGGTTGAGAAACGAAAAAATTGCGATTCCTTTAGATATTTTGATTTACAAGTTAGTCAAGTCATATGTGCGTGCCTCACCTTTGAAACGTGAGGCATTAAAGGCTCTCTCGAAAGCATTGACAGAAGATGAGCTTGTCTACCTTAGAGCACAGTTTAGCCTCTTGGAACCTAAAGATGGATACATTTGGCTTGAGAATTTTAGAGTAGCTCTCATGAAAAATGCAACTGAGGCCATGAAGGAATCAAGGGTTCTTGACATTTTAAATTTGTTGGAGCCACTCTCCTATAAAAAGATGGACTTCGAAGAGTTTTGCGCTGCCGCAATCAGTGTATACCAGCTGGAAGTTCATCAAGAATGGGACAAAATTTCTACCACAGCTTTCGAGTATTTTGAGGAGACAGGAAACCGAATCATTACAGTTGAGGAGTTGGCACAGGAGATGAGTTTGGGTCCTTCAGCTTATTCTTTAATGGGAGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTCGGATATACAAAGTTTTTGCATGGTGTCACAATGCGCAGTTCTAATACAAGGCAACGACAGCTAGTATGA 1785 0.4639 MGHCCSKNVAVNNETVSADHGGLKPPHHAASPPPSGHSVSGASDATPGRHTPATSFSTSPFNSPLPAGVAPSPAKTPGRKFRWPLPPPSPAKPIMSALLRRQGKAKPKDGPIPEEQGEGGEGERSLDKSFGYGKNFGAKFEIGKEVGRGHFGHTCWAKGKKGELKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHKNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYPEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKDEDAVMKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKIAIPLDILIYKLVKSYVRASPLKREALKALSKALTEDELVYLRAQFSLLEPKDGYIWLENFRVALMKNATEAMKESRVLDILNLLEPLSYKKMDFEEFCAAAISVYQLEVHQEWDKISTTAFEYFEETGNRIITVEELAQEMSLGPSAYSLMGDWIRKSDGKLSLVGYTKFLHGVTMRSSNTRQRQLV 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1783g00024 594 Gene3D - 420 549 - -
Gabi1783g00024 594 SUPERFAMILY Protein kinase-like (PK-like) 139 423 IPR011009 -
Gabi1783g00024 594 MobiDBLite consensus disorder prediction 102 128 - -
Gabi1783g00024 594 ProSitePatterns Protein kinases ATP-binding region signature. 146 172 IPR017441 GO:0005524
Gabi1783g00024 594 Pfam Protein kinase domain 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1783g00024 594 FunFam Calcium-dependent protein kinase SK5 312 407 - -
Gabi1783g00024 594 FunFam CDPK-related kinase 1 133 228 - -
Gabi1783g00024 594 SMART serkin_6 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1783g00024 594 Gene3D Transferase(Phosphotransferase) domain 1 230 419 - -
Gabi1783g00024 594 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Gabi1783g00024 594 PANTHER SERINE/THREONINE-PROTEIN KINASE 124 564 - -
Gabi1783g00024 594 SUPERFAMILY EF-hand 435 579 IPR011992 -
Gabi1783g00024 594 Gene3D - 441 509 - -
Gabi1783g00024 594 MobiDBLite consensus disorder prediction 15 128 - -
Gabi1783g00024 594 CDD STKc_CAMK 139 401 - -
Gabi1783g00024 594 FunFam CDPK-related kinase 3 132 304 - -
Gabi1783g00024 594 MobiDBLite consensus disorder prediction 36 65 - -
Gabi1783g00024 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Gabi1783g00024 594 ProSiteProfiles Protein kinase domain profile. 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1783g00024 594 FunFam CDPK-related kinase 1 438 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1783g00024 Gabi-Chr1783 219559 227385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1783g00024 1 585 EF-hand Containing Proteins AT3G50530 56.942 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1783g00024 Pkinase 1.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1783g00024 K13412 - gmx:100803631 1073.54