Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1783g00021 ATGATGGAAGGAGATGAGAATATTCAAGCCTCAAAAGGAAAAAATGTTGAAAGCCTCACCTGCTTAGAGGAACCTCAAAATCCAAGGAAGAAAAGCAAGAAGTTAGAAAAAAAGAGAAGGTTTAGTGATGAACAGATTCGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTGGAGCCAAGGAAGAAGATAAAACTTGCAAGAGATCTTGGGTTGCAGCCTCGCCAAGTTGCTATATGGTTCCAAAACAGAAGGGCAAGGTGGAAATCAAAACGGATAGAGCAAGAATACAGGAAACTCAAAGATGAATATGATAGTTTGGCATCTCAGTTTGATTCACTAAAGGAAGAGAATGAGTCTTTGCAATTAGAGTTGCAGAAGCTAAGTGATTTGATGGAAACATCTCATGATGGTGGAAGGGAAGGCAAGGTTGCCAAGGAAAACAGCACAGAAGATGGTGGTTCAGGTAGTGGATATAGCAATTGGAGGGCTGAAGCAAAGCCAAGGTTTTCAAATGAGGGTTTGGAGGACAAAGTAGTTGTGTGTTCAGATGATCAAAATGAAAAGAGCAGAAGGATTGAAAAATCTGAGGACAGAGGACACCAACTTGTGAGAATGGATAATCATGCAGAGATTCCATTGGCATCACTTGAAAAATGGTACAGTGTGGACCCGAGTGGTATCTTAGACCAGTCATGTAGCGGTTCTCAATGGTTAGATTTCTGGACTTGA 735 0.4095 MMEGDENIQASKGKNVESLTCLEEPQNPRKKSKKLEKKRRFSDEQIRSLECIFESESKLEPRKKIKLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDSLASQFDSLKEENESLQLELQKLSDLMETSHDGGREGKVAKENSTEDGGSGSGYSNWRAEAKPRFSNEGLEDKVVVCSDDQNEKSRRIEKSEDRGHQLVRMDNHAEIPLASLEKWYSVDPSGILDQSCSGSQWLDFWT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1783g00021 244 SUPERFAMILY Homeodomain-like 24 92 IPR009057 -
Gabi1783g00021 244 FunFam Homeobox-leucine zipper protein ATHB-7 17 92 - -
Gabi1783g00021 244 MobiDBLite consensus disorder prediction 135 164 - -
Gabi1783g00021 244 Pfam Homeobox associated leucine zipper 92 133 IPR003106 GO:0006355|GO:0043565
Gabi1783g00021 244 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Gabi1783g00021 244 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Gabi1783g00021 244 MobiDBLite consensus disorder prediction 1 41 - -
Gabi1783g00021 244 CDD homeodomain 41 93 IPR001356 GO:0003677
Gabi1783g00021 244 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Gabi1783g00021 244 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Gabi1783g00021 244 Pfam Homeodomain 37 90 IPR001356 GO:0003677
Gabi1783g00021 244 SMART HOX_1 35 96 IPR001356 GO:0003677
Gabi1783g00021 244 MobiDBLite consensus disorder prediction 24 41 - -
Gabi1783g00021 244 Gene3D - 34 97 - -
Gabi1783g00021 244 MobiDBLite consensus disorder prediction 135 149 - -
Gabi1783g00021 244 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 184 IPR045224 GO:0003700
Gabi1783g00021 244 Coils Coil 84 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1783g00021 Gabi-Chr1783 160359 161746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1783g00021 38 244 Homeobox Transcription Factor Family AT2G46680 41.593 2.86e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi1783g00021 Homeodomain 3.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1783g00021 K09338 - gmx:100499926 388.652