Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1781g00001 ATGGAAATGGCGTCGAACAAGATCGAACGCGCTCACCAGATGTACCGCGACGGACGCTACGGCGAAGCGTTAGGGTTCTACACGGAGGCGATCGCCATGGCCAAGACGAAGCCCCAGAAGATCGCTTTGCATAGCAATCGTGCTGCTTGTTTTCTCAAGCTTCACGATTTCAAGAAGGCAGCAGAAGAGTGTACCTCAGTGCTTGAGCTTGATTACAATCACAGTGGAGCATTGATGCTGCGGGCTCAAACACTAGTCACCCTGAAAGAGTACCATTCAGCACTTTTTGATGTCAACAGACTCTTAGAGTTGAATCCATCCTCAGAGGTCTATCAAGAACTTCAAGCTCGCTTGAGGACACAATTGTCTCTTGCTCCAATACCAGAGTCAGAAGAGGAGTTCGAAGAACAGGAAGAGGAGAAGGCTGAGGTGATACTAAAAGTAGAGAATAAGAAGGAAGAAATGGGAGGGAAATATGCGGCAACTTCTAATACTAGGACACATCAAAAGGATGAACTTGGCAAAGGTATTATTAGTGCTGAATGTGCTCCCCAGGAAACAGACTCCAAGTTTTCATCCAAACAAGGAAGAGACCATAACTATGAGCATAAAAAGTCAACAGCAGAGGCACTAGTTCCCAAAGCGCCAAACAGGGAATCGACCGAGCAACCTTCCAAAGCATGGCAAACTATTCCAAAACCAAAAGGACATTCATCTCTAGACTATGCACGCTGGGATAGTGTTGAAGATGATTCTAGTGAAGATGACGACAACGATGAAGATGAAGACTGCCAGTACCGATTTCGTGTAAGAACAGTCGGTGTACGTCCTGTTAAGTGA 840 0.4607 MEMASNKIERAHQMYRDGRYGEALGFYTEAIAMAKTKPQKIALHSNRAACFLKLHDFKKAAEECTSVLELDYNHSGALMLRAQTLVTLKEYHSALFDVNRLLELNPSSEVYQELQARLRTQLSLAPIPESEEEFEEQEEEKAEVILKVENKKEEMGGKYAATSNTRTHQKDELGKGIISAECAPQETDSKFSSKQGRDHNYEHKKSTAEALVPKAPNRESTEQPSKAWQTIPKPKGHSSLDYARWDSVEDDSSEDDDNDEDEDCQYRFRVRTVGVRPVK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1781g00001 279 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 279 - -
Gabi1781g00001 279 SUPERFAMILY TPR-like 7 121 IPR011990 GO:0005515
Gabi1781g00001 279 MobiDBLite consensus disorder prediction 248 262 - -
Gabi1781g00001 279 MobiDBLite consensus disorder prediction 177 264 - -
Gabi1781g00001 279 MobiDBLite consensus disorder prediction 191 209 - -
Gabi1781g00001 279 Gene3D Tetratricopeptide repeat domain 1 124 IPR011990 GO:0005515
Gabi1781g00001 279 SMART tpr_5 41 74 IPR019734 GO:0005515
Gabi1781g00001 279 SMART tpr_5 4 37 IPR019734 GO:0005515
Gabi1781g00001 279 SMART tpr_5 75 108 IPR019734 GO:0005515
Gabi1781g00001 279 Pfam Tetratricopeptide repeat 53 118 - -
Gabi1781g00001 279 Coils Coil 127 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1781g00001 1 122 Calmodulin-binding Proteins AT3G25230 33.582 2.75e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1781g00001 - - gmx:100792046 414.846