Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1773g00014 ATGGCTGCGCCACTAGGTAGTAGGCTTCAAGACATGTTACAGGCTGCGGTGCAATCTGTTCAGTGGACTTATAGCCTCTTCTGGCAACTTTGTCCACAACAAGTGATTCTTGTTTGGGGTGATGGATACTACAATGGGGCAATTAAGACTCGGAAGACAGTGCAACCAATGGAGGTTAGTGCTGAGGAGGCGTCTCTCCAAAGAAGCCAGCAACTTAGAGAACTCTATGAATCGTTGTCCGCCGGAGAAACAAACCCGCCAACTCGCCGGCCTTGTGCCGCCTTGTCGCCGGAGGACCTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCATTCTCATTTCCTCCTGGTGTCGGGTTGCCGGGAAAAGCATATGCCAGGAGGCAGCATGTATGGCTCGCTGGTGCAAACGAGGTGGACAGCAAAACATTTTCAAGAGCTATTCTAGCCAAGAGCGCTCGTATACAGACGGTGGTGTGCATTCCTCTATTAGACGGCGTCGTTGAGTTTGGTACAACGGAAAAGGTTCAAGAAGACCTTAATTTCATCCAACATGTGAAGAGCTTCTTCATAGACCACCATCCTCTCCCGCCGAAGCCTGCACTCTCGGAGCACTCCACCTCCAACCCCACCTCCTCCTCCGCCGTCATGTACACCGTGGCTGACCCACCCGCCGCCAATCCCAACCAAGACGACATGGATGAAGACGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGATGACGAAGAAGACGAAGCTGAATCTGGCTCCGAAGACGAAACGGGAGGCCGTAACGCCTGCCCAACGTCGACGCCGGACATGATGGCCGCGACGGCGGCGGAGCCAAGCGAGTTGATGCAGATGGAGATGCCGGAGGATATTCGGGTCGGGTCACCAAACGACGGGTCGAATAACTTGGACTCGGACTTTCATTTGCTAGCCGTGAGCCAGACAGGGAACCCGTCGGGTCAAGCTGAGTCAACCCGGAGGTGGGGCCCGATTCCAGACCCGTTGGTTTCGCTACAAGTTCAACTACCGGCATCAGTACTTCCTCCACTAGAAGACTTGACACAAGAAGACACTTACTACGCTCAAACGGTATCAAACATCCTCCAAAACCAGTGCACCCGGTGGACCGAGTCACCCTCCGTTGGCGGTTACATCAGTTACTCCACCCAATCAGCTTTCGCCAAGTGGTGCAGCCTCGCCGACCACCACTTCCACACGGCGGTGGACGGCACCAGTCAGTGGCTCCTCAAGTACATTCTGTTTACAGTCCCATACCTGCACGCCAAGAACCACGACGAGAGTTCTCCCCAAACCCGAGACTCCACCGCCGCAGCCGGAGGCGACCCGGCCGCCAGGTTACGCGGCAAGGGTACAGCGCAAGACGAGCTGAGCGCGAACCACGTGCTGGCAGAGCGCCGCCGCCGCGAGAAGCTGAACGAGAGGTTCATCATTCTGAGGTCGCTGGTTCCGTTCGTGACGAAAATGGACAAGGCTTCCATACTAGGGGACACCATCGAGTACGTGAAACAGCTTCGCAGGAAGATTCAGGACCTGGAGGCGCGTAACCGCCAGATAGAGGTTGAACAACGGTCGAGAGTGGCGGAGCAACCGGTGGTGCAGAGGACAAGTAGCAGCACCACGAAGGAACAACAGAGGAGTGGGGTAACTGTCCTGGTGGGGCCCGAGAAGAGGAAGGTGAGGATCGTTGAAGGGAGGGCGAAGACGGTGGAGGTTGAGGCTTCAACATCAGTGCAAGTTTCGATCATAGAGAGCGACGCGCTTTTGGAGATTGAGTGCACTCACCGAGAAGGGTTGCTTCTTGACGTTATGCAAATGCTGAGGGAGTTGCGAATAGAGGTTATTGGGGTTCATTCTTCGCTGAACAATGCGGTGTTTGTGGCGGAATTGAGGGCTAAGGTTAAGGAAAATGCAAACGGGAAGAAGGTTAGCATTGTTGAAGTGAAGAGAGCACTCAACCAAATTATACCCTACACTACTGACTAG 2016 0.5417 MAAPLGSRLQDMLQAAVQSVQWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLAGANEVDSKTFSRAILAKSARIQTVVCIPLLDGVVEFGTTEKVQEDLNFIQHVKSFFIDHHPLPPKPALSEHSTSNPTSSSAVMYTVADPPAANPNQDDMDEDEEEEEEEEEEDDEEDEAESGSEDETGGRNACPTSTPDMMAATAAEPSELMQMEMPEDIRVGSPNDGSNNLDSDFHLLAVSQTGNPSGQAESTRRWGPIPDPLVSLQVQLPASVLPPLEDLTQEDTYYAQTVSNILQNQCTRWTESPSVGGYISYSTQSAFAKWCSLADHHFHTAVDGTSQWLLKYILFTVPYLHAKNHDESSPQTRDSTAAAGGDPAARLRGKGTAQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQDLEARNRQIEVEQRSRVAEQPVVQRTSSSTTKEQQRSGVTVLVGPEKRKVRIVEGRAKTVEVEASTSVQVSIIESDALLEIECTHREGLLLDVMQMLRELRIEVIGVHSSLNNAVFVAELRAKVKENANGKKVSIVEVKRALNQIIPYTTD 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1773g00014 671 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Gabi1773g00014 671 Pfam Helix-loop-helix DNA-binding domain 469 516 IPR011598 GO:0046983
Gabi1773g00014 671 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 466 515 IPR011598 GO:0046983
Gabi1773g00014 671 MobiDBLite consensus disorder prediction 539 558 - -
Gabi1773g00014 671 MobiDBLite consensus disorder prediction 536 558 - -
Gabi1773g00014 671 PANTHER TRANSCRIPTION FACTOR TT8 7 667 - -
Gabi1773g00014 671 MobiDBLite consensus disorder prediction 435 463 - -
Gabi1773g00014 671 Coils Coil 505 532 - -
Gabi1773g00014 671 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 468 535 IPR036638 GO:0046983
Gabi1773g00014 671 SMART finulus 472 521 IPR011598 GO:0046983
Gabi1773g00014 671 Coils Coil 234 260 - -
Gabi1773g00014 671 MobiDBLite consensus disorder prediction 222 274 - -
Gabi1773g00014 671 Gene3D - 461 532 IPR036638 GO:0046983
Gabi1773g00014 671 MobiDBLite consensus disorder prediction 230 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1773g00014 Gabi-Chr1773 177723 184408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1773g00014 296 671 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 36.745 3.74e-57 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1773g00014 bHLH-MYC_N 2.1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1773g00014 - - gmx:100786815 981.474