LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1772g00006	ATGGCGATTCATCTTCCGGATTACTTCAAATGTCCAATCTCTCTAGAAATAATGTCCGACCCGGTTATTCTCTCTTCGGGTCACACCTTCGACCGTTCCTCAATCCAACGGTGGTTAGACGCCGGTCACCGGACATGTCCAATTACCAAACTACCCCTCTCAGACAACTCCTCTCTCGTCCCAAACCACGCCCTCCGAAGCTTAATCTCCAACTACACACTCCTCTCCCCTCTCCACCAGAAAATTTCCCAACCCCAAACCCTAATTTCCACCCTCACCTCTCAATCCTCAACCGCCGATTCCAAAACCGAATCGCTCCGCCAACTCACCCGCCTCTCCAAGCGCGACTCCGCCTTCCGCCGCCGCCTCGCAGACTCCGGCGCCGTCTCCGCCGTCCTCTCCTGCGTCGACTCCGGCGAACCCGCGCTGCAGGAGAAGGCCCTCTCCCTTCTCCTCAACCTCAGCCTCGACGACGACAACAAGGTCGGCCTCGTCGCCGAGGGCGTCATAGCCCGCGTCGTGGCTGTCCTCCGCCGCGGCGCATCGCCGGATTGCCGCGCGCTTGCCGCGACGGTGATCACGAGCCTCGCAGTTGTGGAGGTGAACAAGGCCACGATCGGCGCGTACCCGGAGGCGATGGAAGCACTGGTGGCGATTCTCCGGGATGGTAAAGGAAGGGAGAGGAAAGAAGCTGCGACGGCACTTTACGCGGTGTGCTCTTTCCCGGATAACCGGCGGAGAGCGGTGGATTGCGGCGCGGTGCCGATTTTGCTGAGGAATGTTGATTCTGGGCTTGAGAGGGGTGTTGAGGTTATTGGTGTTTTGGCTAAGTGTAAAGAAGGAAGAGAGCAAATGGAAGGTTATGATGGGTGTGTGAAGATTCTAGCTCGGGTTTTGAGGGATGGGAGTTCAAGGGGGATTCAGTATGCACTGTTGGCACTCAATTCACTTTGTTTTTATAGTCAGGAAATGGTTTTGATTGCGCTGGAAGAAGGGGTTTTGGAGATTGCTGTTGGGTTGTTGGAGGATGATAATGAGAAAGTGAGGAGAAATTCGTCTAATTTGATTCGTGTTCTAAGGGGAAACCACAATCGTTTAAGTTGA	1104	0.5507	MAIHLPDYFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLSDNSSLVPNHALRSLISNYTLLSPLHQKISQPQTLISTLTSQSSTADSKTESLRQLTRLSKRDSAFRRRLADSGAVSAVLSCVDSGEPALQEKALSLLLNLSLDDDNKVGLVAEGVIARVVAVLRRGASPDCRALAATVITSLAVVEVNKATIGAYPEAMEALVAILRDGKGRERKEAATALYAVCSFPDNRRRAVDCGAVPILLRNVDSGLERGVEVIGVLAKCKEGREQMEGYDGCVKILARVLRDGSSRGIQYALLALNSLCFYSQEMVLIALEEGVLEIAVGLLEDDNEKVRRNSSNLIRVLRGNHNRLS	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1772g00006	367	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	4	76	IPR013083	-
	Gabi1772g00006	367	FunFam	RING-type E3 ubiquitin transferase	69	264	-	-
	Gabi1772g00006	367	SUPERFAMILY	RING/U-box	4	73	-	-
	Gabi1772g00006	367	SUPERFAMILY	ARM repeat	86	359	IPR016024	-
	Gabi1772g00006	367	ProSiteProfiles	U-box domain profile.	4	79	IPR003613	GO:0004842\|GO:0016567
	Gabi1772g00006	367	SMART	Ubox_2	8	72	IPR003613	GO:0004842\|GO:0016567
	Gabi1772g00006	367	FunFam	RING-type E3 ubiquitin transferase	4	75	-	-
	Gabi1772g00006	367	PANTHER	U BOX DOMAIN-CONTAINING	6	357	-	-
	Gabi1772g00006	367	SMART	arm_5	157	198	IPR000225	GO:0005515
	Gabi1772g00006	367	SMART	arm_5	321	361	IPR000225	GO:0005515
	Gabi1772g00006	367	SMART	arm_5	116	156	IPR000225	GO:0005515
	Gabi1772g00006	367	SMART	arm_5	278	319	IPR000225	GO:0005515
	Gabi1772g00006	367	CDD	RING-Ubox_PUB	6	55	IPR045210	-
	Gabi1772g00006	367	Gene3D	-	83	210	IPR011989	-
	Gabi1772g00006	367	Gene3D	-	211	365	IPR011989	-
	Gabi1772g00006	367	Pfam	U-box domain	6	72	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1772g00006	Gabi-Chr1772	192961	194484	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1772g00006	1	361	U-box Gene Family	AT4G21350	62.703	6.85e-154	436

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1772g00006	-		-	gmx:100785141	546.199