Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1772g00005 ATGAAAATATTTCCCCCTAAAGTGCTTCTAAGTACATTTTTTCCGCTGTTTATCCTTCACCCTTCTTGCCATTCACTTGACACCATAACCCCAAATCACCCCATGAAAGACGGCGACGTCTTGGTTTCCAACAACAGAGGAAACTTTGCACTTGGGTTCTTCAGCATGGGAAATTCTACAAGCAGATACGTTGGGATTTGGTACAACAAAATTTCAGAACAAACAATTGTGTGGGTTGCTAACAGAGACACTCCCCTGAATGACACTTCCGGTGTTCTCTCCATCAACAACCACGGAAACCTCGTACTCCATCACCACCGCGACATGAACCTATACCTTAACCCAGTTTGGTCCACAAACGTTTCCACCTCATCTAGCAACGCTTCAGCTAAGCTTTTAGACACAGGAAACATTGTTTTGATCCAAAACAATAACAACAACAACAACAACAACGTTCTGTGGCAGAGTTTTGATTATCCCAGTAACACTATGCTTCCGTTCATGAAGCTCGGGTTGGACCGCAAAACAGGGTTGGACCGGTTCCTGACATCGTGGAAGTCCCCGAATGACCCAGGATCCGGGAACTTGACATACAGAATCGACCCGACCGGGTTTCCCCAGCTGTTCCTGTACAAGAATAAAGCTCCACTGTGGCGGGTCGGTTCGTGGACGGGTCAGAGATGGAGCGGGGTACCCGAGATGACTCCGAACTTCATCTTCAACGTTACCTACATCGACAATGCAGATGAAGTTTCCGTAATGTATGGAGTGAAGGACCCCACTGTTTTCTCTAGAATGGTGCTGGAAGAAACGGGTCACGTGAGAAGGATGACGTGGCAAGCTCATGAGAATAGATGGTTCCAAATATTTTATGCTCCGAAGGAGGAATGTGACAACTTCAGGCAGTGCGGGTCGAATACGAACTGTGACCCGTATAACGCGGACAAGTTTGAGTGCGAGTGTTTACCCGGGTTCGAACCCAAGTTCGGGCGAGAATGGTATCTCAGAGACGGGTCGGGTGGGTGCGTTAGGAAGCGCAACGTGTCCACGTGTAGGAGTGGGGAAGGGTTTGTGAAGGTGGCACCTGTGAAGGTGCCAGATACTTCAAAGGCGCGCGTGGATGAGAGGCTAAGCATGAAAGAGTGCAGGGATAAATGCTTGTGGGATTGTTCATGTGCAGCGTATACAACTGAAAATGAGAGCTCCGAGAGTGGGTGTGTTACTTGGCATGGTGACATGGAGGATACTAGAAAATACACTCAAGTAGGACAAAATTTGTATGTACGTGTGGATGCACTTGAATTAGCTAAATATGCAAAAAATCCGCATGGTTCTCTTGGCAAGAAGGGGACGGTGGCGATTTTAGCCGTTGCTGTTTGCTTGTTATTGTTTTTGGGGTTGACTTTTGTGTATTGGTTTGTAAAAGTCAGGAAACAAAGGATAAGAAGGGATCGCAAATATTCCTTTCGTCTTAACTTGGATGACTCTCCCAATCTCCAAGAATTTGACCGTACGCAAAATTCAGATTTGCCATTCTTTGATCTGAGCTCCATAGCTGCTGCAACAGACAATTTCTCTATTGCTAACAAGCTTGGTCAAGGTGGTTTTGGCTCTGTTTATAAGGGTCTACTGAGTAACGGAGTGGCAATAGCAGTGAAGAGATTGTCCAGGTATTCTGGACAAGGTATAGAAGAGTTTAAAAACGAGGTTGTTTTGATTTCAAAGCTCCAACACAGAAATCTTGTGAGGATCTTGGGTTGCTGCATTCAAGGAGAGGAGAAAATGTTAATCTATGAGTATTTGCCAAATAAAAGCTTGGACTTTTTTATTTTTGATGAGTCTAAAAGGTTACAGCTAGACTGGAAAAAACGATTCGATATCATCTGTGGAGTTGCTAGAGGGATCTTATACCTTCATCACGATTCAAGATTAAGAATCATTCATAGAGACCTAAAGGCCAGCAATGTCTTGCTGGACTCTGCATTGAACCCAAAAATTGCAGATTTTGGTATGGCTAGAATATTTGGTGGAGACCAAATTGAAGCAAACACAAATCGTGTAGTTGGAACCTATGGCTACATGTCCCCAGAATATGCCATGGAAGGACAATTTTCAATAAAGTCTGATGTATACAGCTTCGGAGTTTTACTTCTAGAGATTGTTACAGGCAGAAAGAATAGTGGTCAACATGATGACATTACATCCACGACTTTAGTTGGACATATATGGGATCTATGGAAAGAAGGCAAAGCCATAGAGATTGTTGATGAATCATTAGGAGAGTCATGTTACGACCATGAAGTCCAAAGATGCATACAAATTGGGCTTTTATGTGTACAAGATTATGCTGTAGACAGGCCATCTATGTCAGCAGTTGTTTCCATGTTGGGTAGTGACTCGACTCTTCCTACTCCAAAACACCCAGCATTTATTTTCAAGAGAAGTAATTATGAGAGGTCAAATCCATCAACAAGTGAAGGAATTTGTTCAGTAAATGATGTAAGCATGACTATGATCGAAGCTCGCTAA 2529 0.4369 MKIFPPKVLLSTFFPLFILHPSCHSLDTITPNHPMKDGDVLVSNNRGNFALGFFSMGNSTSRYVGIWYNKISEQTIVWVANRDTPLNDTSGVLSINNHGNLVLHHHRDMNLYLNPVWSTNVSTSSSNASAKLLDTGNIVLIQNNNNNNNNNVLWQSFDYPSNTMLPFMKLGLDRKTGLDRFLTSWKSPNDPGSGNLTYRIDPTGFPQLFLYKNKAPLWRVGSWTGQRWSGVPEMTPNFIFNVTYIDNADEVSVMYGVKDPTVFSRMVLEETGHVRRMTWQAHENRWFQIFYAPKEECDNFRQCGSNTNCDPYNADKFECECLPGFEPKFGREWYLRDGSGGCVRKRNVSTCRSGEGFVKVAPVKVPDTSKARVDERLSMKECRDKCLWDCSCAAYTTENESSESGCVTWHGDMEDTRKYTQVGQNLYVRVDALELAKYAKNPHGSLGKKGTVAILAVAVCLLLFLGLTFVYWFVKVRKQRIRRDRKYSFRLNLDDSPNLQEFDRTQNSDLPFFDLSSIAAATDNFSIANKLGQGGFGSVYKGLLSNGVAIAVKRLSRYSGQGIEEFKNEVVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDFFIFDESKRLQLDWKKRFDIICGVARGILYLHHDSRLRIIHRDLKASNVLLDSALNPKIADFGMARIFGGDQIEANTNRVVGTYGYMSPEYAMEGQFSIKSDVYSFGVLLLEIVTGRKNSGQHDDITSTTLVGHIWDLWKEGKAIEIVDESLGESCYDHEVQRCIQIGLLCVQDYAVDRPSMSAVVSMLGSDSTLPTPKHPAFIFKRSNYERSNPSTSEGICSVNDVSMTMIEAR 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1772g00005 842 CDD STKc_IRAK 531 796 - -
Gabi1772g00005 842 ProSiteProfiles PAN/Apple domain profile. 351 431 IPR003609 -
Gabi1772g00005 842 Gene3D Phosphorylase Kinase; domain 1 490 600 - -
Gabi1772g00005 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 157 - -
Gabi1772g00005 842 SMART blect_4 32 160 IPR001480 -
Gabi1772g00005 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 804 - -
Gabi1772g00005 842 Pfam Protein tyrosine and serine/threonine kinase 527 796 IPR001245 GO:0004672|GO:0006468
Gabi1772g00005 842 Gene3D - 23 157 IPR036426 -
Gabi1772g00005 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 191 IPR036426 -
Gabi1772g00005 842 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Gabi1772g00005 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 491 600 - -
Gabi1772g00005 842 CDD B_lectin 32 160 IPR001480 -
Gabi1772g00005 842 Gene3D Transferase(Phosphotransferase) domain 1 601 804 - -
Gabi1772g00005 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Gabi1772g00005 842 Pfam S-locus glycoprotein domain 218 329 IPR000858 GO:0048544
Gabi1772g00005 842 Pfam D-mannose binding lectin 75 186 IPR001480 -
Gabi1772g00005 842 Pfam PAN-like domain 351 415 IPR003609 -
Gabi1772g00005 842 CDD PAN_AP_plant 349 430 - -
Gabi1772g00005 842 SUPERFAMILY Protein kinase-like (PK-like) 507 796 IPR011009 -
Gabi1772g00005 842 ProSiteProfiles Bulb-type lectin domain profile. 26 153 IPR001480 -
Gabi1772g00005 842 SMART ntp_6 352 430 IPR003609 -
Gabi1772g00005 842 PIRSF SRK 1 842 IPR024171 GO:0004674
Gabi1772g00005 842 Pfam Domain of unknown function (DUF3403) 799 842 IPR021820 GO:0004674
Gabi1772g00005 842 SMART serkin_6 525 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00005 842 ProSiteProfiles Protein kinase domain profile. 525 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00005 842 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1772g00005 Gabi-Chr1772 149878 156589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1772g00005 490 842 Receptor kinase-like Gene Family AT3G45860 56.077 5.06e-132 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1772g00005 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1772g00005 - - gmx:100812814 1390.17