Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1772g00004 ATGAAAATATTTCCCCCTAAAGTGCTTCTAAGTACATTTTTTCCGCTGTTTATCCTTCACCCTTCTTGCCATTCACTTGACACCATAACCCCAAATCACCCCATGAAAGACGGCGACGTCTTGGTTTCCAACAACAGAGGAAACTTTGCACTTGGGTTCTTCAGCATGGGAAATTCTACAAGCAGATACGTTGGGATTTGGTACAACAAAATTTCAGAACAAACAATTGTGTGGGTTGCTAACAGAGACACTCCCCTGAATGACACTTCCGGTGTTCTCTCCATCAACAACCACGGAAACCTCGTACTCCATCACCACCGCGACATGAACCTATACCTTAACCCAGTTTGGTCCACAAACGTTTCCACCTCATCTAGCAACGCTTCAGCTAAGCTTTTAGACACAGGAAACATTGTTTTGATCCAAAACAATAACAACAACAACAACAACAACGTTCTGTGGCAGAGTTTTGATTATCCCAGTAACACTATGCTTCCGTTCATGAAGCTCGGGTTGGACCGCAAAACAGGGTTGGACCGGTTCCTGACATCGTGGAAGTCCCCGAATGACCCAGGATCCGGGAACTTGACATACAGAATCGACCCGACCGGGTTTCCCCAGCTGTTCCTGTACAAGAATAAAGCTCCACTGTGGCGGGTCGGTTCGTGGACGGGTCAGAGATGGAGCGGGGTACCCGAGATGACTCCGAACTTCATCTTCAACGTTACCTACATCGACAATGCAGATGAAGTTTCCGTAATGTATGGAGTGAAGGACCCCACTGTTTTCTCTAGAATGGTGCTGGAAGAAACGGGTCACGTGAGAAGGATGACGTGGCAAGCTCATGAGAATAGATGGTTCCAAATATTTTATGCTCCGAAGGAGGAATGTGACAACTTCAGGCAGTGCGGGTCGAATACGAACTGTGACCCGTATAACGCGGACAAGTTTGAGTGCGAGTGTTTACCCGGGTTCGAACCCAAGTTCGGGCGAGAATGGTATCTCAGAGACGGGTCGGGTGGGTGCGTTAGGAAGCGCAACGTGTCCACGTGTAGGAGTGGGGAAGGGTTTGTGAAGGTGGCACCTGTGAAGGTGCCAGATACTTCAAAGGCGCGCGTGGATGAGAGGCTAAGCATGAAAGAGTGCAGGGATAAATGCTTGTGGGATTGTTCATGTGCAGCGTATACAACTGAAAATGAGAGCTCCGAGAGTGGGTGTGTTACTTGGCATGGTGACATGGAGGATACTAGAAAATACACTCAAGTAGGACAAAATTTGTATGTACGTGTGGATGCACTTGAATTAGCTAAATATGCAAAAAATCCGCATGGTTCTCTTGGCAAGAAGGGGACGGTGGCGATTTTAGCCGTTGCTGTTTGCTTGTTATTGTTTTTGGGGTTGACTTTTGTGTATTGGTTTGTAAAAGTCAGGAAACAAAGGATAAGAAGGGATCGCAAATATTCCTTTCGTCTTAACTTGGATGACTCTCCCAATCTCCAAGAATTTGACCGTACGCAAAATTCAGATTTGCCATTCTTTGATCTGAGCTCCATAGCTGCTGCAACAGACAATTTCTCTATTGCTAACAAGCTTGGTCAAGGTGGTTTTGGCTCTAGATTGTCCAGGTATTCTGGACAAGGTATAGAAGAGTTTAAAAACGAGGTTGTTTTGATTTCAAAGCTCCAACACAGAAATCTTGTGAGGATCTTGGGTTGCTGCATTCAAGGAGAGGAGAAAATGTTAATCTATGAGTATTTGCCAAATAAAAGCTTGGACTTTTTTATTTTTGATGAGTCTAAAAGGTTACAGCTAGACTGGAAAAAACGATTCGATATCATCTGTGGAGTTGCTAGAGGGATCTTATACCTTCATCACGATTCAAGATTAAGAATCATTCATAGAGACCTAAAGGCCAGCAATGTCTTGCTGGACTCTGCATTGAACCCAAAAATTGCAGATTTTGGTATGGCTAGAATATTTGGTGGAGACCAAATTGAAGCAAACACAAATCGTGTAGTTGGAACCTACTTCGGAGTTTTACTTCTAGAGATTGTTACAGGCAGAAAGAATAGTGGTCAACATGATGACATTACATCCACGACTTTAGTTGGACATATATGGGATCTATGGAAAGAAGGCAAAGCCATAGAGATTGTTGATGAATCATTAGGAGATGACTCGACTCTTCCTACTCCAAAACACCCAGCATTTATTTTCAAGAGAAGTAATTATGAGAGGTCAAATCCATCAACAAGTGAAGGAATTTGTTCAGTAAATGATGTAAGCATGACTATGATCGTGCTCCTTTACCGTTGTTGCCACTCACTTGACACCATAACCCCAAACCACCCCATGAAAGACGGCGACATTTTGGTTTCCAACAACAGAGGAAACTTTGCACTTGGGTTCTTCAGCATGGGAAATTCTACAAGCAGATACGTTGGGATTTGGTACAACAAAATTTCAGAACAAACAATTGTGTGGGTTGCTAACAGAGACACTCCCCTGAATGACACTTCCGGTGTTCTCTCCATCAACAACCACGGAAACCTCGTACTCCACCACCACCGCGACATGAACCTATACCTTAACCCAGTTTGGTCCACAAACGTTTCCACCTCATCTAGCAACGCTTCAGCTAAGCTTTTAGACACAGGAAACATTGTTTTGATCCAAAACAATAACAACAACCACAACAACAACGTTCAGTGGCAGAGTTTTGATTATCCCAGTAACACTCTGCTTCCGTTGATGAAGCTCGGGTTGGACCGCAAAACAGGGTTGGACCGGTTCCTGACATCGTGGAAGTCCCCGAATGACCCAGGATCCGGGAACTTGACATACAGAATCGACCCGACCGGGTTTCCCCAGCTGTTCCTGTACAAGAATAAAGCTCCAGTTTGGCGAACCGGGTCGTGGACGGGTCAGAGATGGAGCGGGGTACCCGAGATGACTCCGATCTTCATCTTCAACGTTACCTACATCGACAATGCAGATGAAGTTTCCATAATGTATGAGGTGAAGGACCCCACTGTTTTCTCTAGAATGGTGCTGGAAGAAACGGGTCACGTGAGAAGGATGACATGGCAACCTCGTGAGAATAGATGGTTCCAAATCTGGTATGCTCCGAAGGAGGAATGTGACAACTTCAGGCAGTGCGGGTCGAACACGAACTGTGACCCGTACAACGCGGACAAGTTTGAGTGCGAGTGTTTACCCGGGTTCGAACCCAAGTTCGGGCGAGAATGGTATCTCAGAGACGGGTCGGGTGGGTGCGTTAGGAAGCGCAACGTGTCCACTTGTCGAAGCGGAGAAGGGTTTGTGAAGGTGGCACCTGTGAAGGTGCCAGATACTTCAAAGGCGCGTGTGGATGCGATGCTAAGCAAGAAAGAGTGCAGTGATAAATGCTTGAGGGATTGTTCATGTGCAGCGTATACAACTGAAAATGAGAGCTCCGAGAGTGGGTGTGTTACTTGGCATGGTAACATGGAGGATACGAGAAAATACACAGAATTGGGACAAAATTTGTATGTACGTGTCGATGCACTCGAATTAGCTAAATATGCAAAAAATCCGCATGGTTCTCTTGGCAAGAAGGGGAAGGTGGCGATTTTAGCCGTTGCTGTTTGCTTGTTATTGTTTTTGGGGTTGACTTTTGTGTATTGGTTTGTAAAAGCCAGGAAACAAAGTAAGGATCGCAAATATTCCTTTCGTCTTAGTTTGGATGACTCTCCCAATCTACAAGAATTTGACCGTACGCAAAATTCAGATTTGCCATTCTTTGATCTGAGCTCCATAGCTGCTGCAACAGACAATTTCTCTATTGCTAACAAGCTTGGTCAAGGTGGTTTTGGCTCTGTTTATAAGGGTCTACTGAGTAACGGAGTGGCAATAGCAGTGAAGAGATTGTCAAGATATTCTGGACAAGGTATAGAAGAGTTTAAAAACGAGGTTGTTTTGATTTCAAAGCTCCAACACAGAAATCTTGTGAGGATCTTGGGTTGCTGCATTCAAGGAGAGGAGAAAATGTTAATCTATGAGTATTTGCCAAATAAAAGCTTGGACTTTTTTATTTTTGATGAATCTAAAAGGTTACAGCTAGACTGGAAAAAACGATTTGATATCATCTGTGGGGTTGCTAGAGGGATCTTATACCTTCATCACGATTCAAGATTAAGAATCATTCACAGAGACCTAAAGGCCAGCAATGTTTTGCTGGACTCTGTATTGAACCCAAAAATTGCAGATTTTGGTATGGCTAGAATATTTGGTGGAGACCAAATTGAAGCAAACACAAATCGTGTTGTTGGAACCTATGGCTATATGTCCCCAGAATATGCCATGGAAGGACAATTTTCGATAAAGTCTGATGTATACAGCTTCGGAGTTTTACTTCTAGAAATTGTTACAGGCAGAAAGAATAGTGGTCAACATGATGACATTACATCCACGACTTTAGTTGGACATATATGGGATCTATGGAGAGAAGGCAAAGCCATAGAGATTGTTGATGAATCATTAGGAGAGTCATGTTCCGACCATGAAATCCAAAGATGCATACAAATTGGGCTTTTATGTGTACAAGATTATGCTGTAGACAGGCCATCTATGTCAGCAGTTGTTTCCATGTTGGGTAGTGACTCAACTCTTCCTACTCCAAAGCACCCAGCATTTATTTTCAAGAGAAGTAATTATGAGAGTTCAAATCCATCAACCAGTGAAGGAATTTATTCAGTAAATAGGGTAACTATGACTCTGCTCGAACCTCGCTAA 4773 0.4389 MKIFPPKVLLSTFFPLFILHPSCHSLDTITPNHPMKDGDVLVSNNRGNFALGFFSMGNSTSRYVGIWYNKISEQTIVWVANRDTPLNDTSGVLSINNHGNLVLHHHRDMNLYLNPVWSTNVSTSSSNASAKLLDTGNIVLIQNNNNNNNNNVLWQSFDYPSNTMLPFMKLGLDRKTGLDRFLTSWKSPNDPGSGNLTYRIDPTGFPQLFLYKNKAPLWRVGSWTGQRWSGVPEMTPNFIFNVTYIDNADEVSVMYGVKDPTVFSRMVLEETGHVRRMTWQAHENRWFQIFYAPKEECDNFRQCGSNTNCDPYNADKFECECLPGFEPKFGREWYLRDGSGGCVRKRNVSTCRSGEGFVKVAPVKVPDTSKARVDERLSMKECRDKCLWDCSCAAYTTENESSESGCVTWHGDMEDTRKYTQVGQNLYVRVDALELAKYAKNPHGSLGKKGTVAILAVAVCLLLFLGLTFVYWFVKVRKQRIRRDRKYSFRLNLDDSPNLQEFDRTQNSDLPFFDLSSIAAATDNFSIANKLGQGGFGSRLSRYSGQGIEEFKNEVVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDFFIFDESKRLQLDWKKRFDIICGVARGILYLHHDSRLRIIHRDLKASNVLLDSALNPKIADFGMARIFGGDQIEANTNRVVGTYFGVLLLEIVTGRKNSGQHDDITSTTLVGHIWDLWKEGKAIEIVDESLGDDSTLPTPKHPAFIFKRSNYERSNPSTSEGICSVNDVSMTMIVLLYRCCHSLDTITPNHPMKDGDILVSNNRGNFALGFFSMGNSTSRYVGIWYNKISEQTIVWVANRDTPLNDTSGVLSINNHGNLVLHHHRDMNLYLNPVWSTNVSTSSSNASAKLLDTGNIVLIQNNNNNHNNNVQWQSFDYPSNTLLPLMKLGLDRKTGLDRFLTSWKSPNDPGSGNLTYRIDPTGFPQLFLYKNKAPVWRTGSWTGQRWSGVPEMTPIFIFNVTYIDNADEVSIMYEVKDPTVFSRMVLEETGHVRRMTWQPRENRWFQIWYAPKEECDNFRQCGSNTNCDPYNADKFECECLPGFEPKFGREWYLRDGSGGCVRKRNVSTCRSGEGFVKVAPVKVPDTSKARVDAMLSKKECSDKCLRDCSCAAYTTENESSESGCVTWHGNMEDTRKYTELGQNLYVRVDALELAKYAKNPHGSLGKKGKVAILAVAVCLLLFLGLTFVYWFVKARKQSKDRKYSFRLSLDDSPNLQEFDRTQNSDLPFFDLSSIAAATDNFSIANKLGQGGFGSVYKGLLSNGVAIAVKRLSRYSGQGIEEFKNEVVLISKLQHRNLVRILGCCIQGEEKMLIYEYLPNKSLDFFIFDESKRLQLDWKKRFDIICGVARGILYLHHDSRLRIIHRDLKASNVLLDSVLNPKIADFGMARIFGGDQIEANTNRVVGTYGYMSPEYAMEGQFSIKSDVYSFGVLLLEIVTGRKNSGQHDDITSTTLVGHIWDLWREGKAIEIVDESLGESCSDHEIQRCIQIGLLCVQDYAVDRPSMSAVVSMLGSDSTLPTPKHPAFIFKRSNYESSNPSTSEGIYSVNRVTMTLLEPR 1590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1772g00004 1590 SUPERFAMILY Protein kinase-like (PK-like) 1257 1565 IPR011009 -
Gabi1772g00004 1590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1394 1406 IPR008271 GO:0004672|GO:0006468
Gabi1772g00004 1590 Pfam S-locus glycoprotein domain 218 329 IPR000858 GO:0048544
Gabi1772g00004 1590 Pfam S-locus glycoprotein domain 968 1079 IPR000858 GO:0048544
Gabi1772g00004 1590 ProSiteProfiles PAN/Apple domain profile. 351 431 IPR003609 -
Gabi1772g00004 1590 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 191 IPR036426 -
Gabi1772g00004 1590 CDD B_lectin 782 910 IPR001480 -
Gabi1772g00004 1590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 772 907 - -
Gabi1772g00004 1590 Gene3D - 772 907 IPR036426 -
Gabi1772g00004 1590 Gene3D - 23 157 IPR036426 -
Gabi1772g00004 1590 Pfam PAN-like domain 351 415 IPR003609 -
Gabi1772g00004 1590 Pfam PAN-like domain 1101 1165 IPR003609 -
Gabi1772g00004 1590 SUPERFAMILY Protein kinase-like (PK-like) 508 725 IPR011009 -
Gabi1772g00004 1590 Pfam D-mannose binding lectin 75 186 IPR001480 -
Gabi1772g00004 1590 Pfam D-mannose binding lectin 825 936 IPR001480 -
Gabi1772g00004 1590 ProSitePatterns Protein kinases ATP-binding region signature. 1279 1301 IPR017441 GO:0005524
Gabi1772g00004 1590 SMART ntp_6 352 430 IPR003609 -
Gabi1772g00004 1590 SMART ntp_6 1102 1180 IPR003609 -
Gabi1772g00004 1590 CDD STKc_IRAK 1279 1544 - -
Gabi1772g00004 1590 SUPERFAMILY alpha-D-mannose-specific plant lectins 826 941 IPR036426 -
Gabi1772g00004 1590 CDD PAN_AP_plant 1099 1180 - -
Gabi1772g00004 1590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Gabi1772g00004 1590 Pfam Domain of unknown function (DUF3403) 1547 1590 IPR021820 GO:0004674
Gabi1772g00004 1590 Pfam Domain of unknown function (DUF3403) 726 766 IPR021820 GO:0004674
Gabi1772g00004 1590 CDD B_lectin 32 160 IPR001480 -
Gabi1772g00004 1590 SMART blect_4 32 160 IPR001480 -
Gabi1772g00004 1590 SMART blect_4 782 910 IPR001480 -
Gabi1772g00004 1590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1349 1552 - -
Gabi1772g00004 1590 Gene3D Phosphorylase Kinase; domain 1 499 585 - -
Gabi1772g00004 1590 Gene3D Phosphorylase Kinase; domain 1 1238 1348 - -
Gabi1772g00004 1590 CDD PAN_AP_plant 349 430 - -
Gabi1772g00004 1590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 586 677 - -
Gabi1772g00004 1590 ProSiteProfiles Bulb-type lectin domain profile. 776 903 IPR001480 -
Gabi1772g00004 1590 ProSiteProfiles Bulb-type lectin domain profile. 26 153 IPR001480 -
Gabi1772g00004 1590 ProSiteProfiles Protein kinase domain profile. 525 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00004 1590 ProSiteProfiles Protein kinase domain profile. 1273 1558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00004 1590 Pfam Protein tyrosine and serine/threonine kinase 546 660 IPR001245 GO:0004672|GO:0006468
Gabi1772g00004 1590 Pfam Protein tyrosine and serine/threonine kinase 1275 1544 IPR001245 GO:0004672|GO:0006468
Gabi1772g00004 1590 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 765 1536 - -
Gabi1772g00004 1590 ProSiteProfiles PAN/Apple domain profile. 1101 1181 IPR003609 -
Gabi1772g00004 1590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 157 - -
Gabi1772g00004 1590 Gene3D Transferase(Phosphotransferase) domain 1 586 677 - -
Gabi1772g00004 1590 Gene3D Transferase(Phosphotransferase) domain 1 1349 1552 - -
Gabi1772g00004 1590 SMART serkin_6 525 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00004 1590 SMART serkin_6 1273 1531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00004 1590 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 1240 1348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1772g00004 Gabi-Chr1772 147886 156589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1772g00004 485 725 Receptor kinase-like Gene Family AT4G11530 50.360 8.82e-80 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1772g00004 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1772g00004 - - qlo:115991219 1761.12