Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1772g00003 ATGGAAGGTCAGGAAATTGCTGTGAAGAGACTATCAAAAAATTCTGGTCAAGGTATAGAAGAATTTAAGAATGAGGTAAAGTTAATTGTGAAGCTTCAACATCGAAATCTTGTTCGGCTGCTTGGTTGCAGCATTGAGATGGATGAGAAAATGCTAGTGTATGAGTATATGGAAAATAGAAGCCTTGATGCCATTTTGTTTGACAAAGCAAAAAGATCCTCATTGAACTGGCAAAGGCGCTTCAACATTATATGTGGAATAGCTAGAGGGCTTCTTTACCTTCACCAAGATTCCAGATTTAGGATCATCCATAGGGATCTCAAGGCAAGTAACATTCTGCTTGACAAAGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAATTTTTGGTGCGGATCAGACAGAAGCAAATACAATAAGAGTTGTTGGAACATATGGATATATGTCTCCTGAATATGCTATGGATGGGATCTTCTCAGTGAAATCTGATGTTTTTAGTTTTGGGGTTCTTGTTCTGGAGATCATAAGTGGAAAAAAGAACAGAGGGTTCTATTACACAAACAAAGAATTGAATCTTCTAGGGCATGGGTGGAAGCTGTGGAATGAAGGAAATGCATTGGAACTGATTGATTCATCCATTGACAATTCATATTCACCATCTGAAGTTCTTAGATGCATACAAGTTGGGCTCTTATGTGTGCAAGAGCATGCAGAAGATAGACCAACAATGTCTTCAGTGGTCTTGATGCTGAGCAGTGAAACTGCACCATTGTCACAACCCAAAATTCCCGGGTTTTGCCTAGGCAGGAATCCTATCGAAACTGATTCTTCTTCAAGTAAACAAGATGAATCATGTACTGTGAACCAAGTCACTGTCACAATGCTAGATGCCAGGTAG 903 0.3931 MEGQEIAVKRLSKNSGQGIEEFKNEVKLIVKLQHRNLVRLLGCSIEMDEKMLVYEYMENRSLDAILFDKAKRSSLNWQRRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKDMNPKISDFGMARIFGADQTEANTIRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVLEIISGKKNRGFYYTNKELNLLGHGWKLWNEGNALELIDSSIDNSYSPSEVLRCIQVGLLCVQEHAEDRPTMSSVVLMLSSETAPLSQPKIPGFCLGRNPIETDSSSSKQDESCTVNQVTVTMLDAR 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1772g00003 300 Pfam Protein tyrosine and serine/threonine kinase 4 250 IPR001245 GO:0004672|GO:0006468
Gabi1772g00003 300 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 300 - -
Gabi1772g00003 300 SMART serkin_6 2 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00003 300 Gene3D Phosphorylase Kinase; domain 1 1 56 - -
Gabi1772g00003 300 Pfam Domain of unknown function (DUF3403) 254 300 IPR021820 GO:0004674
Gabi1772g00003 300 SUPERFAMILY Protein kinase-like (PK-like) 3 278 IPR011009 -
Gabi1772g00003 300 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00003 300 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
Gabi1772g00003 300 FunFam Uncharacterized protein 1 56 - -
Gabi1772g00003 300 PIRSF ILK 1 263 - -
Gabi1772g00003 300 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 57 260 - -
Gabi1772g00003 300 Gene3D Transferase(Phosphotransferase) domain 1 57 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1772g00003 Gabi-Chr1772 145863 147813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1772g00003 3 300 Receptor kinase-like Gene Family AT4G11530 60.066 4.84e-129 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1772g00003 PK_Tyr_Ser-Thr 6.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1772g00003 - - aprc:113860154 562.377