Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1772g00002 ATGGATCAGTCCGAGAAACCCATATGGTCCTCGAATCAATCCACAACAGCTATCAACCCTGTTCTTCAGCTTTTGGATTCTGGGAACTTGATTCTCAGAGAAGAAAAAGAGAATGACCCCACAAAGTTTCTATGGCAAAGCTTCGATTACCCAACAGATACCCTTTTACCCGGTATGAAACTGGGGTGGAACTTAGACACAGGCATGGAGAGGCACATAACCTCGTGGAGGATCAAAGATCAAGACCCTTCAAGTGGAGATTTTTCTTTCAAGCTAGATCACCAAGGCCTCCCAGAAATCTTCCTGTGGAACAAGGATGAGAAAATATACAGAAGTGGACCTTGGAATGGTGACAGATTCAGTGGGGTACCAGAGATGCAACCCGTTACAGATTCTATTAAATTTATGTTTTTTGTTGATGAACATGAAGTGTACTACACATTCTCAATTGGGAACCAATCCTTGTTTTCGAGACTCTCTGTGAGTCCTGTAGGGGAACTTCAACGACTTACATGGATCCAAAGCAGCAAACTTTGGAACAAATTCTGGTATGCACCAAAAGATCAATGTGATAATTACAAAGAGTGTGGTCCCTATGGTGTATGTGACACAAATGCTTCACCGGTTTGCCAGTGTGTCAAAGGGTTCCACCCCAAGAACCAGCAGGCATGGAATTTGAGAGATGGGTCAGATGGGTGTGTGAGGAACACGAAATTGGAGTGTGGGAGTGACAAGTTTTTGCATTTGAAGAATGTGAAGTTGCCAGAGACAACCACTGTGTTTGTGAATAGGAGCATGAACCTTAAGGAATGTGGAGATTTGTGCTATAGTAATTGTTCCTGCACTGCTTATGCTAACATCGAGATCACTAATGGAGGAAGTGGTTGTGTGATGTGGGTTGATGAACTTATAGATATGAGACAGTATCCTGCGGGTGGACAAGATCTCTATGTCAGATTAGCAGCTTCCGATGTAGGCTATGGAGGTGATTCTGACCAAAAAAATGATACAGCTAAAGCTGTAGGCATCATAATTGGTGGTACAGCTTTTATACTTTTGGCATTATTGGGTACATGTTTCTTATGGAAGAAGAGGAAATTGCAATGCTTATTGAAATGGAAGACTAGACAAAGAGGCTTTCCTGAAAGAAGTCAGGATTTGCTAATGACTGAGGTGTTTTCAAGTAACAGAGAACAGTGTGGTGAAAACATGGACGACCTAGATTTGCCATTGTTTGATTTTAGTACCATAACAATGGCTACAAACAACTTCTCTGAAGAAACTAAACTTGGACAAGGAGGCTTTGGTAGTGTTTACAAAGGCAGGTTGATGGAAGGTCAGGAAATTGCTGTGAAGAGACTATCAAAAAATTCTGGTCAAGGTATAGAAGAATTTAAGAATGAGGTAAAGTTAATTGTGAAGCTTCAACATCGAAATCTTGTTCGGCTGCTTGGTTGCAGCATTGAGATGGATGAGAAAATGCTAGTGTATGAGTATATGGAAAATAGAAGCCTTGATGCCATTTTGTTTGACAAAGCAAAAAGATCCTCATTGAACTGGCAAAGGCGCTTCAACATTATATGTGGAATAGCTAGAGGGCTTCTTTACCTTCACCAAGATTCCAGATTTAGGATCATCCATAGGGATCTCAAGGCAAGTAACATTCTGCTTGACAAAGATATGAACCCAAAGATATCAGATTTTGGGATGGCTAGAATTTTTGGTGCGGATCAGACAGAAGCAAATACAATAAGAGTTGTTGGAACATATGGATATATGTCTCCTGAATATGCTATGGATGGGATCTTCTCAGTGAAATCTGATGTTTTTAGTTTTGGGGTTCTTGTTCTGGAGATCATAAGTGGAAAAAAGAACAGAGGGTTCTATTACACAAACAAAGAATTGAATCTTCTAGGGCATGGGTGGAAGCTGTGGAATGAAGGAAATGCATTGGAACTGATTGATTCATCCATTGACAATTCATATTCACCATCTGAAGTTCTTAGATGCATACAAGTTGGGCTCTTATGTGTGCAAGAGCATGCAGAAGATAGACCAACAATGTCTTCAGTGGTCTTGATGCTGAGCAGTGAAACTGCACCATTGTCACAACCCAAAATTCCCGGGTTTTGCCTAGGCAGGAATCCTATCGAAACTGATTCTTCTTCAAGTAAACAAGATGAATCATGTACTGTGAACCAAGTCACTGTCACAATGCTAGATGCCAGGTAG 2232 0.4091 MDQSEKPIWSSNQSTTAINPVLQLLDSGNLILREEKENDPTKFLWQSFDYPTDTLLPGMKLGWNLDTGMERHITSWRIKDQDPSSGDFSFKLDHQGLPEIFLWNKDEKIYRSGPWNGDRFSGVPEMQPVTDSIKFMFFVDEHEVYYTFSIGNQSLFSRLSVSPVGELQRLTWIQSSKLWNKFWYAPKDQCDNYKECGPYGVCDTNASPVCQCVKGFHPKNQQAWNLRDGSDGCVRNTKLECGSDKFLHLKNVKLPETTTVFVNRSMNLKECGDLCYSNCSCTAYANIEITNGGSGCVMWVDELIDMRQYPAGGQDLYVRLAASDVGYGGDSDQKNDTAKAVGIIIGGTAFILLALLGTCFLWKKRKLQCLLKWKTRQRGFPERSQDLLMTEVFSSNREQCGENMDDLDLPLFDFSTITMATNNFSEETKLGQGGFGSVYKGRLMEGQEIAVKRLSKNSGQGIEEFKNEVKLIVKLQHRNLVRLLGCSIEMDEKMLVYEYMENRSLDAILFDKAKRSSLNWQRRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKDMNPKISDFGMARIFGADQTEANTIRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVLEIISGKKNRGFYYTNKELNLLGHGWKLWNEGNALELIDSSIDNSYSPSEVLRCIQVGLLCVQEHAEDRPTMSSVVLMLSSETAPLSQPKIPGFCLGRNPIETDSSSSKQDESCTVNQVTVTMLDAR 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1772g00002 743 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 686 - -
Gabi1772g00002 743 Pfam Receptor serine/threonine kinase 382 414 IPR022126 GO:0004674
Gabi1772g00002 743 Pfam PAN-like domain 241 306 IPR003609 -
Gabi1772g00002 743 Gene3D Hepatocyte Growth Factor 239 318 - -
Gabi1772g00002 743 ProSitePatterns Protein kinases ATP-binding region signature. 430 452 IPR017441 GO:0005524
Gabi1772g00002 743 SUPERFAMILY Protein kinase-like (PK-like) 406 695 IPR011009 -
Gabi1772g00002 743 Pfam D-mannose binding lectin 2 77 IPR001480 -
Gabi1772g00002 743 PIRSF SRK 1 743 IPR024171 GO:0004674
Gabi1772g00002 743 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 500 703 - -
Gabi1772g00002 743 SUPERFAMILY alpha-D-mannose-specific plant lectins 4 117 IPR036426 -
Gabi1772g00002 743 CDD PAN_AP_plant 237 321 - -
Gabi1772g00002 743 SMART serkin_6 424 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00002 743 ProSiteProfiles Bulb-type lectin domain profile. 1 45 IPR001480 -
Gabi1772g00002 743 Pfam Protein tyrosine and serine/threonine kinase 427 693 IPR001245 GO:0004672|GO:0006468
Gabi1772g00002 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Gabi1772g00002 743 Pfam Domain of unknown function (DUF3403) 697 743 IPR021820 GO:0004674
Gabi1772g00002 743 SMART ntp_6 241 320 IPR003609 -
Gabi1772g00002 743 Gene3D - 1 48 IPR036426 -
Gabi1772g00002 743 Gene3D Transferase(Phosphotransferase) domain 1 500 704 - -
Gabi1772g00002 743 ProSiteProfiles Protein kinase domain profile. 424 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1772g00002 743 Pfam S-locus glycoprotein domain 110 220 IPR000858 GO:0048544
Gabi1772g00002 743 CDD STKc_IRAK 430 695 - -
Gabi1772g00002 743 Gene3D Phosphorylase Kinase; domain 1 399 499 - -
Gabi1772g00002 743 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 389 499 - -
Gabi1772g00002 743 ProSiteProfiles PAN/Apple domain profile. 241 321 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1772g00002 Gabi-Chr1772 140423 147813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1772g00002 412 743 Receptor kinase-like Gene Family AT4G11530 59.050 2.03e-135 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1772g00002 PK_Tyr_Ser-Thr 8.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1772g00002 - - gmx:106799702 1279.62