Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1771g00029 ATGGCAAGGAAAAGAAAGGCTGTTGCTGCTGCTGAAGTAGTGGAAGAGAGAAACCTATCTGAGGAAACCATGGTCTGGGATGAGATGATGAAGCAAGCTGCAGCACTTGGAGGAGCCAGAAGAGTTAAAAAGAGATTTGTTGGAGTTAGGCAAAGACCATCTGGTAGATGGGTTGCTGAGATAAAAGACACCATTCAAAAGATAAGGGTGTGGTTAGGAACTTTTGATACAGCTGAAGAAGCTGCAAGAGCTTATGATGAAGCTGCTTGCTTGCTTCGTGGTGCAAACACTAGAACAAACTTTTGGCCTTGTTCTCAATCTTCTTCAAGTCCTGCTCTTTCCTCAAAGATCACCAATCTCCTACTTCAAAGGCTTAAAGAAAGGAATAACTCTTTCTCTTCTTCCTCCTCCTCCTCCTTTAGTTCTCTTCTTATCAACCACCAACAAATGCAACAAGTAGATGCATATGAAGCAGGATCAACAGAATTCTCAATTGACCAATTCACTGATTTCCTTAATGATCCTGAAGATTACTGCACAGGCAACAATGACTTCATCAATAATAGTGCTGAAATTGATCACATTACAAGTAGTTTTGAATCATGTTTAACTGAAAAGGAGGAGTTCAAGGTGACAGAAATGGATATGGAATGTAAGTCCTTCAATGTGACACAAACTTCAAGTAATGACAGCAATTCAGGAGTGGAAGGAGAAGAAGACAGTGAAGAAGGTACTGATTTGGTTGTCCATGATTTTGGATTTCTAGACACTGTTGCTCCACCAAGTTACTATTCACCTTTTGAGATAGCTCAAGAGATGGAGGAGCCTGTGGAGGCAGAGAACTATCACTATGGTGATGAGCCTTCAATGCTTAGAGCTGTCATGAAGAGAATGAAATATGAGAGAAAGTTCTCAGCTTCTCTTTATGCCTTCAATGGGATACCTGAGTGCTTGAAGTTGAAACTTGAATCAGGAAACATAATGGGAAGAGGAGTAGCTGATCAATTATCCAACCTCCAAATGGCTTGTAACAAAAACAAACTTGAGAAGAATAAGGAGGAGAATGAATACATGGTAGCAATGGATAAGAAAGAGGAAGAAAATCAACAAACTTCAATTGACATGGATTCCTCTTCTTCATCTAGTGTTGATGGAGAATTGTTACTTTGGAATTCACTAGATCTTCCTCCTATTTGCTTTGTTAACTTACTGGAAAATGGTTCATTTACTTAG 1233 0.3958 MARKRKAVAAAEVVEERNLSEETMVWDEMMKQAAALGGARRVKKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSSSPALSSKITNLLLQRLKERNNSFSSSSSSSFSSLLINHQQMQQVDAYEAGSTEFSIDQFTDFLNDPEDYCTGNNDFINNSAEIDHITSSFESCLTEKEEFKVTEMDMECKSFNVTQTSSNDSNSGVEGEEDSEEGTDLVVHDFGFLDTVAPPSYYSPFEIAQEMEEPVEAENYHYGDEPSMLRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGNIMGRGVADQLSNLQMACNKNKLEKNKEENEYMVAMDKKEEENQQTSIDMDSSSSSSVDGELLLWNSLDLPPICFVNLLENGSFT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1771g00029 410 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Gabi1771g00029 410 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 305 - -
Gabi1771g00029 410 FunFam ethylene-responsive transcription factor RAP2-11 44 103 - -
Gabi1771g00029 410 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Gabi1771g00029 410 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Gabi1771g00029 410 Coils Coil 336 370 - -
Gabi1771g00029 410 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Gabi1771g00029 410 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Gabi1771g00029 410 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Gabi1771g00029 410 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Gabi1771g00029 410 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Gabi1771g00029 410 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1771g00029 Gabi-Chr1771 228391 229623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1771g00029 43 121 AP2-EREBP Transcription Factor Family AT5G19790 74.684 2.70e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1771g00029 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1771g00029 K09286 - gmx:100786711 582.793