Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1771g00028 ATGGATGGATCAACTGGCCGTGGTAGTGGTGGAGGTGTGGACATGTTTCTACCAAATTATAAGTTGGGAAAAACACTGGGCATTGGGGCCTTTGGCAAGGTGAAAATTGCGGAGCATGTATTGACTGGTCATAAAGTTGCCATAAAGATTCTTAACCGCCGCAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATAAAAATTTTAAGATTGTTCATGCATCATCACGTCATACGACTTTATGAGGTAGTAGAAACGCCAGCAGACATATATGTTGTTACGGAGTATGTGAAATCTGGAGAGCTCTTTGATTACATAGTAGAAAAGGGTAGGTTGCATGAAGATGAAGCCCGCAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTATTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCCTGAGAATTTACTTTTGGACTCAAAAAGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCATTTTCTTAAGACAAGTTGCGGAAGCCCTAATTATGCAGCTCCGGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATACGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAACCTCTTCAAGAAAATTAAGGGTGGGATATACACTCTTCCTAGCCATCTATCACCCAGCGCTAGAGATTTGATACCAAGGATGCTTGTGGTGGATCCCATGAAGAGGATGACCATACCAGAGATACGCCAACACCCATGGTTCCAAGTTCGTCTTCCGCGTTATTTAGCAGTGCCACCACCGAATACACTGCAACAAGCCAAAAAGATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAGTCAATTGGTTGACTCTCTTCGCAACAGGATACAAAATGATGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTCCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATTCTGGTTTCAACCATATCCATTCCAGCAAAGTTGCTTCTCCTGTTGTTGGGCACCGCATTCCAGGGTATATAGATTATCAAGGAGGAGGAATGAGGCAACAATTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCTCGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTGTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTCTCATTCCTGGTCATCATGAAGCAATGGTTAACAAGTGTGTGCGCAGTAATGATTACTTTGGAAATGATTCCAGCATTATTGAGAATGAAACTCTGTCTGATTCAAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAACTCGTGAGGAAAAGTATCTGCTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTATGTGCTGCTTTCCTTGCGCAGCTTCGTGTTCTCTAA 1548 0.4244 MDGSTGRGSGGGVDMFLPNYKLGKTLGIGAFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHHHVIRLYEVVETPADIYVVTEYVKSGELFDYIVEKGRLHEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKSNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPSARDLIPRMLVVDPMKRMTIPEIRQHPWFQVRLPRYLAVPPPNTLQQAKKIDEEILQEVVNMGFDRSQLVDSLRNRIQNDGTVTYYLLLDNRFRVSSGYLGAEFQETMDSGFNHIHSSKVASPVVGHRIPGYIDYQGGGMRQQFPVERKWALGLQSRAQPREIMTEVLKALQELNVCWKKIGHYNMKCRWVALIPGHHEAMVNKCVRSNDYFGNDSSIIENETLSDSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1771g00028 515 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gabi1771g00028 515 Gene3D Kinase associated domain 1, KA1 396 513 - -
Gabi1771g00028 515 SUPERFAMILY Protein kinase-like (PK-like) 17 286 IPR011009 -
Gabi1771g00028 515 Pfam UBA/TS-N domain 294 330 IPR015940 -
Gabi1771g00028 515 CDD AMPKA_C 390 512 - -
Gabi1771g00028 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Gabi1771g00028 515 FunFam Non-specific serine/threonine protein kinase 11 101 - -
Gabi1771g00028 515 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1771g00028 515 PANTHER SERINE/THREONINE KINASE 19 337 - -
Gabi1771g00028 515 FunFam Non-specific serine/threonine protein kinase 396 513 - -
Gabi1771g00028 515 CDD UBA_SnRK1_plant 294 334 - -
Gabi1771g00028 515 CDD STKc_AMPK_alpha 17 272 - -
Gabi1771g00028 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Gabi1771g00028 515 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1771g00028 515 SMART uba_6 295 332 IPR015940 -
Gabi1771g00028 515 Gene3D Transferase(Phosphotransferase) domain 1 12 352 - -
Gabi1771g00028 515 FunFam Non-specific serine/threonine protein kinase 11 350 - -
Gabi1771g00028 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Gabi1771g00028 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Gabi1771g00028 515 SUPERFAMILY KA1-like 329 514 IPR028375 -
Gabi1771g00028 515 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1771g00028 Gabi-Chr1771 212028 219144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1771g00028 20 272 CBL-interacting serine-threonine protein kinases AT4G24400 51.969 4.45e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Gabi1771g00028 Pkinase 1.3e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1771g00028 K07198 - gmx:547544 945.266