Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1771g00025 ATGAGAATCAATCCGACTACCTCTGGTCCTGAAGTTTCTGCGCTTGAAAAAAAAAATCAGGGACGTATCTCCCAAATAATTGGGCCGGTACTAGATGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTGGGAAATAATCGAGTGAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTAAGTGTTCCGGTCGGTGGAACAACTCTTGGACGAATTTTCAATGTACTTGGAGAGCCTATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCCGCCTTTATACAGTTAGATACAAAATTATCCATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTTATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGTGGGGTTGGTGAGCGGACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGGGTAATTAACGAAAAAAATATTGCGGAATCCAAAGTAGCTCTCGTATATGGTCAAATGAATGAACCACCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTTCGCGATGTCAATGAACAAGATGTACTTCTATTTATCGACAATATCTTCCGCTTCGTCCAAGCAGGATCCGAAGTATCCGCCTTATTGGGTCGCATGCCTTCCGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAACAAGGGTCCATAACATCTATTCAAGCTGTTTATGTACCTGCAGACGATTTGACCGATCCTGCCCCTGCCACGACGTTTGCACATTTAGATGCTACTACTGTATTATCAAGGGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACATCAACTATGCTGCAACCTCGTATCGTTGGTGAAGAACATTATGAAACTGCGCAAAAGGTTAAACAAACTTTACAACGTTACAAGGAACTTCAGGACATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGACGATCGCTTAACCGTCGCAAGAGCACGAAAAATAGAGCGTTTCTTATCACAGCCGTTTTTCGTAGCAGAAGTATTTACAGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCCGAACAATCCTTTTATTTGGTAGGTAATATTGATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGCAAATTGAAGAAATGA 1431 0.4137 MRINPTTSGPEVSALEKKNQGRISQIIGPVLDVGQQINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGTTLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEKNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKQGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQKVKQTLQRYKELQDIIAILGLDELSEDDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQSFYLVGNIDEATAKATNLEMESKLKK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1771g00025 476 FunFam ATP synthase subunit beta 76 352 - -
Gabi1771g00025 476 CDD ATP-synt_F1_beta_N 19 76 - -
Gabi1771g00025 476 CDD F1-ATPase_beta_CD 77 355 - -
Gabi1771g00025 476 Gene3D - 76 352 IPR027417 -
Gabi1771g00025 476 Gene3D - 17 75 - -
Gabi1771g00025 476 SMART AAA_5 142 334 IPR003593 GO:0016887
Gabi1771g00025 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 355 IPR027417 -
Gabi1771g00025 476 NCBIfam F0F1 ATP synthase subunit beta 36 468 IPR005722 GO:0015986|GO:0045261|GO:0046933
Gabi1771g00025 476 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 130 350 IPR000194 GO:0005524
Gabi1771g00025 476 CDD ATP-synt_F1_beta_C 357 464 - -
Gabi1771g00025 476 Pfam ATP synthase alpha/beta family, beta-barrel domain 37 73 IPR004100 GO:0046034|GO:1902600
Gabi1771g00025 476 Hamap ATP synthase subunit beta [atpB]. 18 468 IPR005722 GO:0015986|GO:0045261|GO:0046933
Gabi1771g00025 476 Coils Coil 458 476 - -
Gabi1771g00025 476 PANTHER ATP SYNTHASE 17 474 - -
Gabi1771g00025 476 Gene3D - 353 476 IPR024034 -
Gabi1771g00025 476 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 353 468 - -
Gabi1771g00025 476 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 16 75 IPR036121 GO:0046034|GO:1902600
Gabi1771g00025 476 ProSitePatterns ATP synthase alpha and beta subunits signature. 341 350 IPR020003 GO:0005524
Gabi1771g00025 476 FunFam ATP synthase subunit beta 353 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1771g00025 Gabi-Chr1771 202479 204041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1771g00025 129 414 Primary Pumps ATPases(2) AT1G78900 30.164 1.62e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1771g00025 K02112 - qsa:O6P43_035629 894.804