Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1771g00022 ATGGGTTGTATTAACTCCAAAAATGCGGTTGCCGGAGATTCTCCTCCGTCGCCGGCGGTCGGTGACATTGTTGAGGTTGTTCATGCATCTTCGAGGGGACATTCTGGGTTATTGGTTGTGGAACCAAGAACATCATCAGAGGAACATAAGAAAAATTTCAGCAAGAACAACTCAAAGAAAAGTAGTAGTTCTTTCAGCTTCAAGATTGGGTTCTCTCATAGGTATGTTGAGGCTGAACAGAATGCTGCTGGTTGGCCTTCTTGGCTCACAGCTGCTGCAGCAGAAGCTGTACAAGGATGGGTTCCTCTCAAAGCTGATTCTTTTCAAAAGTTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCACGTGAAGTTGAAACTGGGAGGATGTTTGCTCTGAAGAAGGTGCGTTTTGACAATTTACAACCTGAGAGCATAAGGTTCATGGCAAGAGAAATAACAATTCTCCGTAGGCTTGATCATCCAAACATCATGAAATTGGAGGGTATAATCACTGCTCGACTATCAAATAGCATATACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCACGTCCTGACATTGTCTTCACTGACTCACAGATAAAGTGTTACATGAGGCAGCTATTGAGTGGAATTGAGCATTGTCATGTACGTGGGATTATCCATAGAGACATAAAAGTATCCAATATCTTGTTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCCCAAATAACAAGCATCACTTAACAAGTCGTGTAGTGACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACCAATTATGGAGTATCAGTGGATCTATGGAGTGTAGGCTGTGTATTTGCAGAACTTTTTCTGGCGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCACCTGATGAGTTCTGGAAGAAGTGTAAGCTTCCTCATGCAACAATGTTTAAGCCTCAGACTAGTTATGAAAGCTCTCTTCGGGAAAGGTGTGCAGATTTTCCTGAAAGTGCTATAAACCTGCTAGAGACTTTACTGTCCATTGACCCCTACAAGCGTGGGACTGCCTCCTCTGCCTTAATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGCAATCCATCAAGCCTTCCAAAATATCCACCTAGCAAAGAAATGGATGCTAAAAGTCGAGACGATGAATACAGGAAAAAGACGAGTGTAGGTAAAATAAGAGAGGCTGCAACATCAAGAAGGCAACAAAGACGAGTCTCTAAAGTTTTGCAAGAACCGAACAATTTCAATAAAACAACTTCAAAAGAGAACATTCCTCAAAATGCTCGTAGAGATGATGGTAAAGCACATCTTACAAGGGGAAAAGGAGGAGCCATGCACCAACCAAAGCCTGCATTGGATGCAATGTCAGAGGCTTCTCAAATGATGAATGATGCTAATGGTAAAGGCTATAGTGTCCCAACACAGGTCCAAGGATCTAGTGGCTTTACATGGGCAAAAAGAAGAAAACAAGATGCTTCATCCACACTATCAGATGGCTCAAGAAGCAAAATCAGTGCACTTGATCCAAACTTTGCAAAAGGCACATATGATTTAACCAAACAAAGGGTATCCATGGATTTTGATCCTGCAGAACTGATAAATCCTCAGGGCCACAGAGAACAAGGTGCACATTGGAATGAAAATGGTATGCGGCATGCAGCTCGTAAATCAAGGTTTGGAAGAGGTAAATAA 1809 0.4207 MGCINSKNAVAGDSPPSPAVGDIVEVVHASSRGHSGLLVVEPRTSSEEHKKNFSKNNSKKSSSSFSFKIGFSHRYVEAEQNAAGWPSWLTAAAAEAVQGWVPLKADSFQKLDKIGQGTYSSVFRAREVETGRMFALKKVRFDNLQPESIRFMAREITILRRLDHPNIMKLEGIITARLSNSIYLVFEYMEHDLAGLVSRPDIVFTDSQIKCYMRQLLSGIEHCHVRGIIHRDIKVSNILLNNEGVLKIGDFGLANTISPNNKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLAKPILKGRTEVEQLHKIFKLCGSPPDEFWKKCKLPHATMFKPQTSYESSLRERCADFPESAINLLETLLSIDPYKRGTASSALMSEYFSTKPYACNPSSLPKYPPSKEMDAKSRDDEYRKKTSVGKIREAATSRRQQRRVSKVLQEPNNFNKTTSKENIPQNARRDDGKAHLTRGKGGAMHQPKPALDAMSEASQMMNDANGKGYSVPTQVQGSSGFTWAKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTKQRVSMDFDPAELINPQGHREQGAHWNENGMRHAARKSRFGRGK 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1771g00022 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Gabi1771g00022 602 SUPERFAMILY Protein kinase-like (PK-like) 103 397 IPR011009 -
Gabi1771g00022 602 MobiDBLite consensus disorder prediction 42 64 - -
Gabi1771g00022 602 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Gabi1771g00022 602 PANTHER CELL DIVISION PROTEIN KINASE 106 396 - -
Gabi1771g00022 602 MobiDBLite consensus disorder prediction 402 488 - -
Gabi1771g00022 602 MobiDBLite consensus disorder prediction 411 445 - -
Gabi1771g00022 602 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1771g00022 602 FunFam probable serine/threonine-protein kinase At1g54610 95 190 - -
Gabi1771g00022 602 Gene3D Phosphorylase Kinase; domain 1 95 190 - -
Gabi1771g00022 602 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1771g00022 602 FunFam probable serine/threonine-protein kinase At1g54610 191 432 - -
Gabi1771g00022 602 MobiDBLite consensus disorder prediction 520 546 - -
Gabi1771g00022 602 CDD STKc_CDK9_like 108 392 - -
Gabi1771g00022 602 MobiDBLite consensus disorder prediction 571 602 - -
Gabi1771g00022 602 MobiDBLite consensus disorder prediction 463 478 - -
Gabi1771g00022 602 Gene3D Transferase(Phosphotransferase) domain 1 191 431 - -
Gabi1771g00022 602 MobiDBLite consensus disorder prediction 446 462 - -
Gabi1771g00022 602 MobiDBLite consensus disorder prediction 520 543 - -
Gabi1771g00022 602 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1771g00022 Gabi-Chr1771 176851 182503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1771g00022 100 447 Core Cell Cycle Gene Families AT5G10270 45.455 1.97e-110 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi1771g00022 Pkinase 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1771g00022 - - gmx:100790917 924.465