Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1771g00004 ATGGCTACTTCGAAACCCCAACGAACTCCAGAGGAAGTGGAGGACATTATCATCAGGAAAATCTTCCTCGTTTCGATCACCGAAACCAACAGCGATTCAAGAATCGTGTACTTGGAGTTAACCGCGGCTGAGATTCTCAGCGAGGGGAAGGACCTTCGTCTCTCGCGTGATTCTATGGAGAGAGTACTCATCGATCGAATCTCCGGCGATTTCGCTGCCGCTGCCAGCGAATCCACCTTTCAGTACCTCGTAGGTTGTTACCAGCGCGCGCACGATGAGGGGAAGAAAATCGCGAACATGAAGGACAAGGATTTGAGGTCGGAGATGGAAGCTGTGGTGAGGCAAGCGAAGAAGCTTTGCGTCTCGTACTGCAGGATACATTTGGCGAATCCGGAACTCTTTTCGAGCCCGAGTTCTGGTTCCGGCGGAGGCAGTTCGTCGCTTTTGCCGCTGATATTCGCGGAGGTAGGTGGTGGAGGCGTGTTTGGCGGCGGAGGAGGTGGCGGAGGAGTGAAGAGTCCGCCGGGGTTTCTTGAGGAGTTGTTTTGGGATTCTGACGTTGATAGCTTGGTCCCTATTTTTAAAGGGCTGTATGAGAAGTTGAGAGAGAGTGTGATGAATGTCTCTGCTCTTGGGAATTTCCAAGACTCTCTGAGGGCTTTGTTGTTTTTGGTTAGGTTTCCCATTGGTGCAAAGTCCTTTGTGAGTCATGAATGGTGGATTCCAAAAGCCGTTTACATGAATGGGCGTGCCATTGAAATGGCCAGCATTTTGGGTCCCTTTTTTCACATCAGTGCCCTTCCTGACCAAACATTTTTCAAGAGCCAGCCTGACGTTGGACAGCAGTGCTTTTCTGATGCATCAACTCGGCGACAATCTGATTTGTTATCTTCATTCTCCACTATCAAAACTGTCATGAATAGCTTATATGATGGCCTGGCTGAAGTTCTCCTCATCCTCCTTAAAAGTACAGATACTCGTGAAAATGTACTTGAGTTCCTTGCGGAGGTGATCAATTTAAACGCATCCAGAGCTCATATACAGGTTGACCCTATAACTTGTGCAAGTTCGGGCATGTTTGTAAGTCTTGGTGCTGTCATGCTTCGGCTCTGTGAGCCATTTTTAGACGCAAATTTAACAAAAAGGGACAAAATTGATCCAAAATATGTACACTATTCAAACCGTTTGAAGCTAAGTGGGTTGACTGCTCTTCACGCATCATCAGAAGAAGTTGCTGAATGGCTTGATAGTAAAACCCCAGCTAAGGTTGGGGAAATCGATCAATGTAATGATGGTCAGAAACGCTTGCAACAGTCTCAAGAAGCCAGCAGTTCTGGTAGTAATAATGCCGGTGAGCTTTCAAATGAAAATTCTGCACGTGGTGGAAAGACGAAATATTCATTTATTTGTGAATGCTTCTTCATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGGTGTGAAGATGCTCTTTCCACATTTAAAGCCATGCGGGGGCAGTCTCCCTCTCCTCAGTTGGAGTCGGATATATCTCGACTTGAGAAAGAAATGGAGTTGTACTCACAGGAAAAGCTATGTTACGAAGCTCAGATATTGAGGGATAGCACTCTTATTCAGAATGCACTTTACTTCCACCGCCTGATGATTGTTTGGTTAGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCACCAACTTGCCCAATGGAGTTTGCTACTCTGCCTGAGCATTTTGTGGAAGATGCCATGGAACTTCTAATATTTGCTTCTCGTATTCCAAAGGCGTTGGATGGAGTCGTACTGGATGAATTTATGAACTTTATAATCATGTTCATGGCCAGCCCTAAATTTATCAAAAACCCATATCTGAGAGCAAAGATGGTTGAAGTATTGAACTGTTGGATGCCCAGTAGGAGCTTATCTACTACAGCTACTCTATTTGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTAAATCTTTATGTCGACATTGAGTTCACTGGTTCTCACACGCAGTTTTATGACAAGTTTAACATCCGCCACAATATCGCCGAACTCCTTGAATACCTGTGGCAGGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAAGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGACGAAAGTCTGAACAAAATTCTTGAGCTGAAAGAATTGGAGGCTGAGATGTCAAATACGGTTGAATGGGAGCAACGGACAGATCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATTGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAAATTACTGCTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTTTGCTGCAATTGGTGGGTCCACAAAGAAAATCACTTAGCCTGAAAGACCCTGAGAAGTATGAATTTCGTCCAAAGGATTTGCTAAAACAGATTGTGCATGTATATGTTCATGTGGCTAGAGGTGATACAAAGTCCGTCTTCTCAGCTGCCATTTCAAAGGATGGTCGATCATATAATGATCAGTTATTTAGTGCTGCAGCAGAAGTCCTTCACAGGATTGGTGACGATCCAAGAATCATCCATGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCAGCTTCAGAGGCCATGGATACCGAAGCTACTCTAGGAGAAATACCAGATGAATTCCTTGATCCAATTCAATACACTTTGATGAAGGATCCAGTCATCTTGCCTTCTTCAAGGATCACAGTTGATCGACCTGTCATTCAGAGACATCTTCTTAGTGATAGTACTGATCCTTTCAACCGTTCCCATCTTACTGCGGATTCGCTGATTCCTAATGATGAACTAAAAGCGAGAATTGAGGAGTTTGTCAGGTCGCAGCACATGAAGAAACAGACTGACGGGCTAAGCATACAGAGTACCAAGGCCACCATTCAGACCACAAATGGGGAAATGTTAATTGATTAG 3111 0.4394 MATSKPQRTPEEVEDIIIRKIFLVSITETNSDSRIVYLELTAAEILSEGKDLRLSRDSMERVLIDRISGDFAAAASESTFQYLVGCYQRAHDEGKKIANMKDKDLRSEMEAVVRQAKKLCVSYCRIHLANPELFSSPSSGSGGGSSSLLPLIFAEVGGGGVFGGGGGGGGVKSPPGFLEELFWDSDVDSLVPIFKGLYEKLRESVMNVSALGNFQDSLRALLFLVRFPIGAKSFVSHEWWIPKAVYMNGRAIEMASILGPFFHISALPDQTFFKSQPDVGQQCFSDASTRRQSDLLSSFSTIKTVMNSLYDGLAEVLLILLKSTDTRENVLEFLAEVINLNASRAHIQVDPITCASSGMFVSLGAVMLRLCEPFLDANLTKRDKIDPKYVHYSNRLKLSGLTALHASSEEVAEWLDSKTPAKVGEIDQCNDGQKRLQQSQEASSSGSNNAGELSNENSARGGKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTFKAMRGQSPSPQLESDISRLEKEMELYSQEKLCYEAQILRDSTLIQNALYFHRLMIVWLVGLVGGFKMPLPPTCPMEFATLPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPKFIKNPYLRAKMVEVLNCWMPSRSLSTTATLFEGHQLSLEYLVRNLLNLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWEQRTDQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKDLLKQIVHVYVHVARGDTKSVFSAAISKDGRSYNDQLFSAAAEVLHRIGDDPRIIHEFIQLGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADSLIPNDELKARIEEFVRSQHMKKQTDGLSIQSTKATIQTTNGEMLID 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1771g00004 1036 FunFam Ubiquitin conjugation factor e4 a 937 1015 - -
Gabi1771g00004 1036 SMART Ubox_2 941 1004 IPR003613 GO:0004842|GO:0016567
Gabi1771g00004 1036 ProSiteProfiles U-box domain profile. 937 1011 IPR003613 GO:0004842|GO:0016567
Gabi1771g00004 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 937 1016 IPR013083 -
Gabi1771g00004 1036 PANTHER UBIQUITINATION FACTOR E4 3 1013 IPR045132 GO:0000151|GO:0030433|GO:0034450
Gabi1771g00004 1036 MobiDBLite consensus disorder prediction 432 460 - -
Gabi1771g00004 1036 Pfam Ubiquitin elongating factor core 258 921 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Gabi1771g00004 1036 CDD RING-Ubox_UBE4A 940 1009 - -
Gabi1771g00004 1036 Pfam U-box domain 938 1008 IPR003613 GO:0004842|GO:0016567
Gabi1771g00004 1036 Coils Coil 517 544 - -
Gabi1771g00004 1036 SUPERFAMILY RING/U-box 930 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1771g00004 Gabi-Chr1771 30711 41183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1771g00004 1 1036 U-box Gene Family AT5G15400 74.881 0.0 1594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1771g00004 K10597 - gmx:100806175 1739.16