Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1764g00001 ATGAAGTGGGAAATGGAAATCCTCCCTCCTGCACCATATATTCACAACCCCAACAACACCAATTGGTTTTTGGAAGATCACAGGAACACTAAATGGACTCCTGCAGAGAACAAGCTGTTTGAAAATGCTCTTGCTGTGTATGATAAGGACACCCCTGATAGGTGGCACAAAGTTGCTGAAATGATACCAGGGAAAACAGTTGGTGATGTGATGAAGCAGTACAAGGAATTAGAAGCAGATATTAGTAACATAGAAGCTGGGTTGATCCCAGTTCCTGGCTACAGTACCACCACCTCACCCTTCACCTTAGACTGGGTGAACACTCCTGGTTATGATGATGGGTTTAAAGGACTCACTGCAAAGAGATCCTCCTCAGGAAGACCTCCTGATCAGGAAAGGAAGAAGGGTGTGCCATGGACTGAAGAGGAACACAAGTTGTTTCTACTTGGTTTGAAAAAGTATGGGAAAGGTGATTGGAGAAATATTTCTCGCAATTTTGTTATGACTAGAACCCCAACTCAAGTTGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGATAAGAGGAGGGCTAGCATCCATGACATAACAACAGTTAATCTCACAGAAACCACAAGAACAACAACTCCTTCAGAAGACAGCAAGAGATCCACTTCACCACAGCATTCTATGATGCTCTCACACCAGCAGCCAAATTCTACTGCTGCCACATCTGGAGTGCATTTTCAGTGGAATAATCAGCCAAATGAAGGAGTGGCTATGGCTCTCAATCCTTCACATGAACAAGTGTTCATGTCTCCTTATGGGCTTAACCCCTATGGGTTTAAAATGCAGTGCCAAAATCTGCACAGAAGTCCTCTTCATGAGTCTTCTTACTTAGTACCCCAGACACAAAACATGGTTTTCCAAATGCAATCCTCCCAACACTATTCCCATGCATGA 957 0.4378 MKWEMEILPPAPYIHNPNNTNWFLEDHRNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVGDVMKQYKELEADISNIEAGLIPVPGYSTTTSPFTLDWVNTPGYDDGFKGLTAKRSSSGRPPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVMTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTTTPSEDSKRSTSPQHSMMLSHQQPNSTAATSGVHFQWNNQPNEGVAMALNPSHEQVFMSPYGLNPYGFKMQCQNLHRSPLHESSYLVPQTQNMVFQMQSSQHYSHA 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1764g00001 318 Gene3D - 25 91 - -
Gabi1764g00001 318 ProSiteProfiles SANT domain profile. 27 77 IPR017884 -
Gabi1764g00001 318 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Gabi1764g00001 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Gabi1764g00001 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Gabi1764g00001 318 FunFam Transcription factor SRM1 24 91 - -
Gabi1764g00001 318 SUPERFAMILY Homeodomain-like 30 85 IPR009057 -
Gabi1764g00001 318 CDD SANT 138 183 IPR001005 -
Gabi1764g00001 318 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 27 256 IPR043363 -
Gabi1764g00001 318 MobiDBLite consensus disorder prediction 207 242 - -
Gabi1764g00001 318 MobiDBLite consensus disorder prediction 116 139 - -
Gabi1764g00001 318 SUPERFAMILY Homeodomain-like 133 186 IPR009057 -
Gabi1764g00001 318 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Gabi1764g00001 318 SMART sant 28 80 IPR001005 -
Gabi1764g00001 318 SMART sant 135 185 IPR001005 -
Gabi1764g00001 318 ProSiteProfiles Myb-like domain profile. 24 78 IPR001005 -
Gabi1764g00001 318 CDD SANT 31 77 IPR001005 -
Gabi1764g00001 318 Gene3D - 137 187 - -
Gabi1764g00001 318 FunFam transcription factor MYB1R1 137 188 - -
Gabi1764g00001 318 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Gabi1764g00001 318 Pfam Myb-like DNA-binding domain 31 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1764g00001 Gabi-Chr1764 12837 15272 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1764g00001 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1764g00001 - - gmx:100784163 520.776