Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1763g00010 ATGTCTAGCCGAAGGTCCAGGCAACAATCTGCATCTACAAGGATCTCCGATGACCAAATCATCGAACTTGTTTCAAAGTTGCGTCAACTTGTTCCTGAGATTCGTGATAGGCGTTCTGACAAGGTTTCAGCATCTAAGGTCCTACAGGAGACCTGTAACTACATTAGAAGCTTACACAGAGAGGTTGATGACTTAAGCGAACGGCTATCTCAATTGTTGGCCACAATTGAAGCTGATAGTCCAGAGGCTGCTATCATTAGGAGCCTAATTAACGGATAA 279 0.4409 MSSRRSRQQSASTRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLATIEADSPEAAIIRSLING 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1763g00010 92 FunFam Transcription factor ILI6 5 87 - -
Gabi1763g00010 92 Coils Coil 55 75 - -
Gabi1763g00010 92 Gene3D - 2 84 IPR036638 GO:0046983
Gabi1763g00010 92 CDD bHLH_AtPRE_like 9 75 - -
Gabi1763g00010 92 Pfam Helix-loop-helix DNA-binding domain 22 59 IPR011598 GO:0046983
Gabi1763g00010 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 78 IPR036638 GO:0046983
Gabi1763g00010 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Gabi1763g00010 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1763g00010 Gabi-Chr1763 184832 186305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1763g00010 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 2.16e-36 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1763g00010 HLH 3.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1763g00010 - - gmx:100794486 160.999