Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1763g00008 ATGTATGATATCATCACTATCATATCCTCTTCATCTTGTTCTTCTACCATGGACTTCACACCTTCTCATCACACTTTCATGTTTCAAACCCATGAAGATCATGACCAGTTCCGTTCAACTAATTCAACCTCTCTCAACACCTTTCCATCTTTACCACCCCAACACTTTCAAGGGGTTGGTGCAGCTTTCATGATGAAGCGATCTATGTCATTTTCAGGCATAGAGAGCAAGTGTGATGAAGTGCATGTTGATGATGATTTATCAGATGATGGATCCCAAACTGGGGAGAAGAAGAAGAGGTTGAGTTTGGAACAAGTGAAGGCACTTGAGAAGAGTTTTGAGGTTGGGAACAAGCTTGAACCTGAAAGGAAAATGCAGCTTGCTAAGGCTCTTGGTTTGCAACCAAGACAGATTGCTATATGGTTCCAGAACAGAAGAGCAAGGTGGAAAACCAAGCAACTTGAGAAGGAATATGAAGTTCTCAAGAAACAATTTGAAGCTGTTAAGGCTGATAATGATACCCTTAAGGCTCAGAACCAGAAACTACATGCAGAGTTACAAGCTCTAAAGAGCAGGAGTTGCTGTGAAACAAGAACAATTAGCCTCAAAAAAGAAACTGAGGGTTCTTGGAGCAATGGAAGTGAAAACAGCTCAGATATTAATTTGGATCTCTCAAGAACACCAATCATGAATAGTCCTGTATCTTCTCAGAATGGTAAAAGCCTTCTTCTATCCACTACTTCCCTAAAACCCACCAGCATAACCCAACTCCTCCAATGCTCATCATCAAGATCAGATCTTCAAGATGAAAGCTTATGCAACATGTTTCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGCCTGAGCAGCAACACCATTTTCATTGA 891 0.4108 MYDIITIISSSSCSSTMDFTPSHHTFMFQTHEDHDQFRSTNSTSLNTFPSLPPQHFQGVGAAFMMKRSMSFSGIESKCDEVHVDDDLSDDGSQTGEKKKRLSLEQVKALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDTLKAQNQKLHAELQALKSRSCCETRTISLKKETEGSWSNGSENSSDINLDLSRTPIMNSPVSSQNGKSLLLSTTSLKPTSITQLLQCSSSRSDLQDESLCNMFHNIDEQQNFWPWPEQQHHFH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1763g00008 296 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Gabi1763g00008 296 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
Gabi1763g00008 296 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Gabi1763g00008 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 65 288 IPR045224 GO:0003700
Gabi1763g00008 296 SUPERFAMILY Homeodomain-like 84 154 IPR009057 -
Gabi1763g00008 296 SMART HOX_1 95 156 IPR001356 GO:0003677
Gabi1763g00008 296 Pfam Homeobox associated leucine zipper 152 192 IPR003106 GO:0006355|GO:0043565
Gabi1763g00008 296 Gene3D - 89 159 - -
Gabi1763g00008 296 Pfam Homeodomain 97 150 IPR001356 GO:0003677
Gabi1763g00008 296 Coils Coil 144 192 - -
Gabi1763g00008 296 CDD homeodomain 97 153 IPR001356 GO:0003677
Gabi1763g00008 296 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Gabi1763g00008 296 FunFam Homeobox-leucine zipper protein ATHB-13 89 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1763g00008 Gabi-Chr1763 139730 141901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1763g00008 24 288 Homeobox Transcription Factor Family AT3G01220 51.071 1.15e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi1763g00008 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1763g00008 K09338 - gmx:100790803 418.313