Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1763g00006 ATGGCAAGTCCTCGTGGAGTGAACGTTGGAAGAAACAACAACAACAACAACAACAAAGATATTGAAGGACAAAGTTCGCGGTTTTGGTGGAAACTAAGGTTTTTGTTAGGTTGCATGGCTCTACGGTTTAAAGCTGAAGAAGAAGGCTCCTCTAGTAGAGATAAGAAAAAAGATGAAGAAACCAGATCAACAATAACCAATTCCAATACTAGAGAGAACCCAGTTGCTTCTCATGTATCCCCAAGAAACAATAATCCAAGAAGAGCAAGATCATCTCCCAAGTTAAAAGGAATTGCTACATCCTCTTCAAGCTTAAGCGAGGAGCTAAGTGCTTATTCCAATCTGCACAAGTTCTCCTTCTATGAGCTCAAGGTGGCAACAAGCAATTTCAAACCTCAAAATTTGCTTGGCGAGGGTGGATTTGGTTGTGTCTACAAAGGCTGGATCAAAGAGAATGAGAGCTCTTCACCAAGACCACTTCCAGTTGCTGTGAAGACTCATAACCAGAATGGACTTCAGGGTCATAGGGAATGGCTTGCGGAAGTGAATTATCTTGGGGAACTTCGTCATCCAAATCTGGTTAAATTGGTTGGTTATTGCATTGAGGATGATAAAAGGCTATTAGTATATGAGTTCATGCCTCGGGGAAGCTTGGAGAGTCATTTGTTTAAGAGATCTGTGTGCCTTCCTTGGAATCACAGAATGAAAATTATGCTTGGTGCTGCTAAGGGACTTGCATTTCTGCATGAGGAAGCTGAGAGGCCAGTGATATTTCGAGACTTCAAAACATCTAATATTCTATTGGATGGGGAATACAATGCAAAACTTTCTGATTTTGGCCTTGCTAAAGATGCTCCAGAGGGAGACTTAACTCATGTTTCAACTCGAGTTATGGGAACATATGGCTATGCAGCCCCTGAGTATGTGATGACAGGACATCTCACTTCCAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTACTTGAAATGTTGACTGGGAAAAAAGCTATGGACAAAACAAGGCCCAGAGGGGAGCATCACTTGGTGGAATGGGCAAGGCCACTGCTAAACAAAAGAAACTATTTCCAATTGATTGACCCTAAACTACAAGTTCATTTTTCACAAAAGGGAGCATATATGGTAATGAAGTTGGCATCTCATTGCCTTGTTGGAGACCCAAAAACAAGACCCTTAATGAGTGAAGTTGTTAGAGTGTTGAAGTCTTTGCCTCCTTACAAAAACATGGCTTCTACTTCTCAACTCCCACTTCAAGGTTTCCATGTAGGACCCTCAAACCATGGAGCTAACAAGTATGGTTTGAGAACTGCTTCAACTTCAAGGAACATCCCTAGTCGCTTTCAAGCCTCCCCTTGCGACTTGAAGTATCCCCTTCCTCCACCCCAAACCTTGTGA 1413 0.4239 MASPRGVNVGRNNNNNNNKDIEGQSSRFWWKLRFLLGCMALRFKAEEEGSSSRDKKKDEETRSTITNSNTRENPVASHVSPRNNNPRRARSSPKLKGIATSSSSLSEELSAYSNLHKFSFYELKVATSNFKPQNLLGEGGFGCVYKGWIKENESSSPRPLPVAVKTHNQNGLQGHREWLAEVNYLGELRHPNLVKLVGYCIEDDKRLLVYEFMPRGSLESHLFKRSVCLPWNHRMKIMLGAAKGLAFLHEEAERPVIFRDFKTSNILLDGEYNAKLSDFGLAKDAPEGDLTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGKKAMDKTRPRGEHHLVEWARPLLNKRNYFQLIDPKLQVHFSQKGAYMVMKLASHCLVGDPKTRPLMSEVVRVLKSLPPYKNMASTSQLPLQGFHVGPSNHGANKYGLRTASTSRNIPSRFQASPCDLKYPLPPPQTL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1763g00006 470 Pfam Protein tyrosine and serine/threonine kinase 133 406 IPR001245 GO:0004672|GO:0006468
Gabi1763g00006 470 FunFam Serine/threonine-protein kinase BIK1 98 212 - -
Gabi1763g00006 470 MobiDBLite consensus disorder prediction 66 100 - -
Gabi1763g00006 470 FunFam Serine/threonine-protein kinase PBS1 213 422 - -
Gabi1763g00006 470 CDD STKc_IRAK 136 409 - -
Gabi1763g00006 470 Gene3D Phosphorylase Kinase; domain 1 105 212 - -
Gabi1763g00006 470 Gene3D Transferase(Phosphotransferase) domain 1 213 421 - -
Gabi1763g00006 470 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1763g00006 470 ProSitePatterns Protein kinases ATP-binding region signature. 136 165 IPR017441 GO:0005524
Gabi1763g00006 470 ProSiteProfiles Protein kinase domain profile. 130 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1763g00006 470 MobiDBLite consensus disorder prediction 47 100 - -
Gabi1763g00006 470 SUPERFAMILY Protein kinase-like (PK-like) 103 406 IPR011009 -
Gabi1763g00006 470 PANTHER OS01G0588500 PROTEIN-RELATED 68 408 - -
Gabi1763g00006 470 MobiDBLite consensus disorder prediction 47 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1763g00006 Gabi-Chr1763 92079 94356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1763g00006 78 409 Glycoside Hydrolase AT3G07070 49.405 1.09e-105 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1763g00006 PK_Tyr_Ser-Thr 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1763g00006 - - qsa:O6P43_009064 514.227