Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1759g00001 ATGCATCTCACTCACCTCTGCATTATTCTACCCTCAGATTTTGATGAAATAGAGGAACATGAACTGGCTCATCCAACTCCACAAGCCAATGAGATAAAACAAGTTAAGGCCAAAAAACAGCCTCAAGGGGCATGTGGAGGAAAAGTTGTTGCTTTCCTTCATGGTTCTATGACTAGGTTGCATGACTCAAAATGGGGGAGAAGTCTTTGCACACATGGAGCAAGAAAAACCAAGCACAAGAAGAACTCAATTGTGTTTCATGACATGGATGGTGTACCACTCTTTAACAAGATTGGGAGGGACAAAGAAAATCCAAGGATTTTTGGGTATGCTGAACTTTATATAGGATCAAGGGGTTTCTCTGAAGAAGAAGTTCTTGGCAGTGGAGGGTTTGGGAAAGTGTACAAGGCTGTTTTGCCTAGTGATGGAACATTGGTTGCTGTGAAAAGCTGCTTAGCAGGGAAAAGGGTACAATTTGAGAAGTCTTTTGCAGCAGAATTAGCATCTGTGGCTCATCTGCGCCACAAGAACCTTGTTAGGTTGAGGGGTTGGTGTGTTTTTGAGGATCAACTTTACCTTGTTTATGATTACATGCCTAACCTTAGCCTTGACCGTGTCCTATTTCGTAGGCCTGAGAACTTGAAGGAAGAGCCTCTTGGTTGGTTAAGGAGAAGGAAAATTGTTAAAGGCTTGGCAGATGCATTGTATTATCTACATGAACAGTTAGAAACTCAGATTATTCATAGGGATGTGAAAACCAGCAATGTAATGCTTGATTCCCATTATAATGCTCGGTTGGGTGATTTTGGTTTGGCAAGGTGGCTAGAGCATGAGCTTGAGTATGAAACAAGGAAAACATCAACAAAATTTGATCATTTCAACTTGGCTGAGACAACAAGAATTGGTGGCACAATTGGTTATTTGCCCCCTGAAAGCTTCCAGAGAAAAAGCATTGCTACCTCCAAATCTGATGTTTTCAGCTTTGGGATAGTTGTGTTAGAGGTGGTGTCTGGTAGGAGAGCTATAGATCTTACATACCCAGATGATCAAATCATTTTGCTTGATTGGATTAGAAGACTATCTGATGAAAGGAAGTTTGATGATGCAGGGGATTCAAGGCTATTAAATGGTTCCTACAATATTTTTCAGATGAAACATTTGATTCACATAGGCCTTTTATGCACACTCCATGACCCAAAATTGAGACCAAGCATGAAATGGATTGTGGAAGCACTTTCTGACATCTCAAGTAAATTGCCACCACTCCCTTCATTTCATTCACATCCTATGTATATCTCTTTGTCATCCTCATCTGAGACTAGTCCAAGCAGCACAAGAGGCACTGGCTCAGGCATAGACAATGCTAGCAATCATGCTTCTTCCAAATATGTCACAGCCAATGGTGATACTGTGTATGTAACTGCTGAAGCTGAACATAGAAACAGTGGAATAAGATCTTCTAAGAGTAATAGCATGATTCATCAGCCACCATTTCCTATTGTTGAAACTCCTAGGGAGATATCATACAAGGAAATTGTGTTAGCCATTGATAATTTCTCAGAGTCAAGAAGGGTGGCAGAGCTAGACTTTGGAACTGCATACCATGGAATCCTTGATGGCCATTACCATGTCATGGTGAAACGCCTTGGCATGAAGACATGTCCTGCATTGCGCCATAGATTCTCCAATGAGCTAAGGAATTTGGCAAGACTTCACCATAGGAATTTGGTGCAACTTAGAGGATGGTGCACTGAGCAAGGAGAGATGCTTGTGGTTTATGATTACTCAGCAAGAAAAATTCTTAGTCACAAACTTCACCACCATCATAACAATGGTAGTAGAAATGAGTGTTCTGTCCTCAAATGGCATCAAAGATACAACATAGTGAAATCACTTGCATCTGCACTTCTTTATCTGCATGAGGAATGGGATGAAAAAGTCATTCACAGGAACATTACCTCTTCAGCAATCTTTCTTGAACCTGATATGACCCCAAGACTTGGTAGTTTTGCTTTGGCTGAATTTTTGTCAAGGAATGAGAATTCTCATCATGCAATCACTGACACTAGCAAATCAGTTCGTGGGATTTTCGGCTACATGTCACCTGAATATGTCGAATCCGGTGAGGCAACCATTGCTTGTGATGTTTATAGCTTTGGTGTGGTGGTGCTTGAGGTTATTAGTGGACATATGGCTGTGGATTTTAGGCAAAAAGAGGTGCTATTGGTAAAGAAGGTTCGTGAATTTGAGATGAGAAAAAGGCCATTGCATGAATTAGCAGATATAGGACTAAATGGAGAGTACAGTTACAAAGAATTTATGAGATTGGTAAGGTTAGGAATTGCATGCACTCAATCTGATCCAAAATTGAGACCAAGCACTAGACAAATAGTAAGCATCATTGATGGCAATGACAAATTAATCATGGGAGAGAACATGGAGAGCATGGAAGAATGGAGAAGAAGAAATGCTTGTTCTTTGTCTCTGGTTAAGAGAATCCAAGCTCTAGGAATACAGTAA 2520 0.4067 MHLTHLCIILPSDFDEIEEHELAHPTPQANEIKQVKAKKQPQGACGGKVVAFLHGSMTRLHDSKWGRSLCTHGARKTKHKKNSIVFHDMDGVPLFNKIGRDKENPRIFGYAELYIGSRGFSEEEVLGSGGFGKVYKAVLPSDGTLVAVKSCLAGKRVQFEKSFAAELASVAHLRHKNLVRLRGWCVFEDQLYLVYDYMPNLSLDRVLFRRPENLKEEPLGWLRRRKIVKGLADALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHELEYETRKTSTKFDHFNLAETTRIGGTIGYLPPESFQRKSIATSKSDVFSFGIVVLEVVSGRRAIDLTYPDDQIILLDWIRRLSDERKFDDAGDSRLLNGSYNIFQMKHLIHIGLLCTLHDPKLRPSMKWIVEALSDISSKLPPLPSFHSHPMYISLSSSSETSPSSTRGTGSGIDNASNHASSKYVTANGDTVYVTAEAEHRNSGIRSSKSNSMIHQPPFPIVETPREISYKEIVLAIDNFSESRRVAELDFGTAYHGILDGHYHVMVKRLGMKTCPALRHRFSNELRNLARLHHRNLVQLRGWCTEQGEMLVVYDYSARKILSHKLHHHHNNGSRNECSVLKWHQRYNIVKSLASALLYLHEEWDEKVIHRNITSSAIFLEPDMTPRLGSFALAEFLSRNENSHHAITDTSKSVRGIFGYMSPEYVESGEATIACDVYSFGVVVLEVISGHMAVDFRQKEVLLVKKVREFEMRKRPLHELADIGLNGEYSYKEFMRLVRLGIACTQSDPKLRPSTRQIVSIIDGNDKLIMGENMESMEEWRRRNACSLSLVKRIQALGIQ 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1759g00001 839 Gene3D Phosphorylase Kinase; domain 1 96 197 - -
Gabi1759g00001 839 MobiDBLite consensus disorder prediction 436 458 - -
Gabi1759g00001 839 SMART serkin_6 120 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1759g00001 839 SMART serkin_6 519 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1759g00001 839 Gene3D Phosphorylase Kinase; domain 1 479 595 - -
Gabi1759g00001 839 Gene3D Transferase(Phosphotransferase) domain 1 601 821 - -
Gabi1759g00001 839 Pfam Protein kinase domain 121 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1759g00001 839 SUPERFAMILY Protein kinase-like (PK-like) 498 801 IPR011009 -
Gabi1759g00001 839 Gene3D Transferase(Phosphotransferase) domain 1 198 418 - -
Gabi1759g00001 839 ProSitePatterns Protein kinases ATP-binding region signature. 126 155 IPR017441 GO:0005524
Gabi1759g00001 839 ProSiteProfiles Protein kinase domain profile. 519 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1759g00001 839 Pfam Protein tyrosine and serine/threonine kinase 524 798 IPR001245 GO:0004672|GO:0006468
Gabi1759g00001 839 PANTHER - 81 414 - -
Gabi1759g00001 839 FunFam Receptor like protein kinase S.2 597 824 - -
Gabi1759g00001 839 SUPERFAMILY Protein kinase-like (PK-like) 105 444 IPR011009 -
Gabi1759g00001 839 ProSiteProfiles Protein kinase domain profile. 120 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1759g00001 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Gabi1759g00001 839 FunFam Receptor like protein kinase S.2 198 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1759g00001 Gabi-Chr1759 13100 15746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1759g00001 509 807 Receptor kinase-like Gene Family AT3G53810 35.738 5.48e-49 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi1759g00001 PK_Tyr_Ser-Thr 4.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1759g00001 - - gmx:100781955 1299.65