Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1757g00003 ATGGCTATGCAGTCAACGCAGCATCTCCTTCTGCTGCTTCTGGCAATGCTTTTGGCAGTAGAAACAGCAGCAGAACCCCTTCCAAACTGCACAAGAAAATGTGGTTCCGTTGAAATTCCCTACCCATTTGGCACAACCGAGGGTTGTTACCTTGACACCCCATTCCTCATCACATGCAACCAAACTTCAGGTTCACCACCCACCCCATTCTTGCAAGGTGGAAAAACAACAGTGCTAAACATCTCACTCGATGGTGAATTGCGTATCTCATTGCCATCAGCTAAAAATTGCTACAATGATAGCGGAGAACCTACAATTTGGGAAACTAGTGGCCTCAAGTTGAGTCACTTTCACATCTCATCAACCCGAAACAAATTAACTGCAATTGGTTGTGACACGCTTGGACTAATAACTGGCCATGGTTCGCAGAAAGACTACAACACAGGATGCGAGTCTTTTTGCAACAGTCTTGTTGAGATCGTAGCTAATGGTACTTGCACTGGCACTGGTTGTTGCGAGGCTTCTATCCCCGAGGGACTATCCACTGTCGTTTTTGAATCTTCAAGCTCACAGAAAAGACACACTACTGTACACGACTTCAGTACATGTGGTTATGCGTTTTTGGTTGAAGAAGGAGCTTACAACTTCGTGTCCACAGATATTGTAAACTTGCAGAGGACAATGTTTCCTGTGGTGGTGGATTGGTCAGTGGGGAAACAAACATGCGAGGAAGCAAAGAAAAACCTTTCTAGCTATGCGTGTGTCGCAGAAAACAGTTACTGCTCCAATTCAAAGAATGGACCTGGCTACCGTTGCCACTGCTCTGATGGTTTTCAGGGAAACCCTTACCTTCTTGATGGCTGTGAAGAAATTAATAAATGCTTGGAATCCAACAATTGCATTGATGGAGCAATATGCCACAACTTCCGCGGGGGCTACTATTGTTCGTGCCCCAAAGGACACAAAGGAGATGGGAAAATTGATGGAACCGGTTGCCTTCCCAAATCAAGTACTAATTCAAGGACATTTATCAGTGTGATAATTGCATTGGGTGTAGTGATTATAATCGTAATTTGTGTGTATTGGTGGATGAAGAACAGAAAGCTCTTCAAACGTAAAGAGAAAAATTTTGCACAAAATGGTGGCATATTGTTACAACAACTGTTAGCTAAGCATGGAAGATCAAGTGAAACAGCGAGAGTGTTTAGTGAGGAGGAACTCAAGGAGGCCACCAACAACTTTGATGAAGGAAGGGTCCTTGGCCAAGGGTATTATGGAAAAGTTTACAAAGGAGAATTACTTGATAACAGAATGGTAGCTATAAAAAGGTCCAAAATCAATAACCCAATCCATATTGAGCAGTTCATCAATGAGGTATATGTGCTTTCCCAAATCAACCATAGGAACGTGGTAAAGCTCTTGGGGTGTTGTTTAGAGACAGAACTTCCCTCGCTTGTCTATGAATTCATTCCTAATGGTACCATTTCTCAGCATCTTCATGATCAAACCCAATCTTTTACAAGACTCTCATGGGAAACACGATTGAGAATAGCAACAGAAACTGCTGGAGCCCTTGCATACTTGCATTCTGCTGCTTCAACACCAATCATACACAGAGATGTGAAAACTTCTAATATACTACTAGATTCTGATCTCACTGCAAAGGTTTCGGATTTTGGAGCTTCAAGGTTTATTCCTCTTGATCAAACTCAGTTAACCACTTTTGTGCAAGGGACTCTAGGGTATCTTGACCCTGAATATGTCAACACGACCAAATTAACTGTGAAGAGCGACGTTTATAGCTTTGGGGTTGTTCTAGCAGAGCTAATCACAGGTAAGAAGGCACTTTCTTTCAGCAGGCCTGAGAGTGATACAAATCTAGCAATGTACTTTGTTTCTTCAATGAATGATGGAAGGTTACTTGCAATTGTGGATAACCAAATAACAAATGAGGCAAATATTGTTGAGCTTGAGCAAGTATTGGAAGTTGCCAATATCACAAAACGTTGTTTAAGTGAGAAGGGTAAGAAAAGGCCTACCATGAAGGAAGTGGCAATGGAACTTGAAGGACTGAGAATAATGATAAAGAACAGACAGGAAAGTGTCGAGATGTCTTCAGATGAGACAGGGCACTTTCTCAATGATGATTTGTTTCCTTACTATGTTGACATCGAAGCTGGAGTTGGTTCAAGTGGTGTAAATTCTGGGATGTATAGCTTAAACCAGGTTTCCATGATATTGAGTGGTGGAAGATAA 2256 0.4198 MAMQSTQHLLLLLLAMLLAVETAAEPLPNCTRKCGSVEIPYPFGTTEGCYLDTPFLITCNQTSGSPPTPFLQGGKTTVLNISLDGELRISLPSAKNCYNDSGEPTIWETSGLKLSHFHISSTRNKLTAIGCDTLGLITGHGSQKDYNTGCESFCNSLVEIVANGTCTGTGCCEASIPEGLSTVVFESSSSQKRHTTVHDFSTCGYAFLVEEGAYNFVSTDIVNLQRTMFPVVVDWSVGKQTCEEAKKNLSSYACVAENSYCSNSKNGPGYRCHCSDGFQGNPYLLDGCEEINKCLESNNCIDGAICHNFRGGYYCSCPKGHKGDGKIDGTGCLPKSSTNSRTFISVIIALGVVIIIVICVYWWMKNRKLFKRKEKNFAQNGGILLQQLLAKHGRSSETARVFSEEELKEATNNFDEGRVLGQGYYGKVYKGELLDNRMVAIKRSKINNPIHIEQFINEVYVLSQINHRNVVKLLGCCLETELPSLVYEFIPNGTISQHLHDQTQSFTRLSWETRLRIATETAGALAYLHSAASTPIIHRDVKTSNILLDSDLTAKVSDFGASRFIPLDQTQLTTFVQGTLGYLDPEYVNTTKLTVKSDVYSFGVVLAELITGKKALSFSRPESDTNLAMYFVSSMNDGRLLAIVDNQITNEANIVELEQVLEVANITKRCLSEKGKKRPTMKEVAMELEGLRIMIKNRQESVEMSSDETGHFLNDDLFPYYVDIEAGVGSSGVNSGMYSLNQVSMILSGGR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1757g00003 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 697 IPR045274 GO:0007166
Gabi1757g00003 751 Pfam Wall-associated receptor kinase galacturonan-binding 30 87 IPR025287 GO:0030247
Gabi1757g00003 751 FunFam Wall-associated receptor kinase 2 240 292 - -
Gabi1757g00003 751 SMART egfca_6 290 333 IPR001881 GO:0005509
Gabi1757g00003 751 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Gabi1757g00003 751 CDD EGF_CA 291 324 - -
Gabi1757g00003 751 Pfam Protein tyrosine and serine/threonine kinase 417 688 IPR001245 GO:0004672|GO:0006468
Gabi1757g00003 751 Gene3D Laminin 239 332 - -
Gabi1757g00003 751 FunFam Wall-associated receptor kinase 2 490 711 - -
Gabi1757g00003 751 Gene3D Transferase(Phosphotransferase) domain 1 490 705 - -
Gabi1757g00003 751 Gene3D Phosphorylase Kinase; domain 1 387 489 - -
Gabi1757g00003 751 SUPERFAMILY EGF/Laminin 290 324 - -
Gabi1757g00003 751 ProSitePatterns Protein kinases ATP-binding region signature. 420 442 IPR017441 GO:0005524
Gabi1757g00003 751 ProSiteProfiles Protein kinase domain profile. 414 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1757g00003 751 CDD STKc_IRAK 420 691 - -
Gabi1757g00003 751 SMART egf_5 241 289 IPR000742 -
Gabi1757g00003 751 SMART egf_5 293 333 IPR000742 -
Gabi1757g00003 751 ProSiteProfiles EGF-like domain profile. 290 324 IPR000742 -
Gabi1757g00003 751 SMART serkin_6 414 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1757g00003 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Gabi1757g00003 751 SUPERFAMILY Protein kinase-like (PK-like) 397 689 IPR011009 -
Gabi1757g00003 751 FunFam Wall-associated receptor kinase 2 384 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1757g00003 Gabi-Chr1757 50418 53470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1757g00003 3 733 Receptor kinase-like Gene Family AT1G21250 44.578 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi1757g00003 PK_Tyr_Ser-Thr 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1757g00003 - - gmx:100798027 870.537