Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1751g00008 ATGGGTTGCATTTACTCTAAGGTTTGCATCGGTGACACTTGCAAGGGTTCTAGCGTCAATGAAGACCCAATTGTGAGAACGGGTACTGGTGAAGTTGTTCTTGCTGGTGATTTCTCACCATCTGGGTTTTCAGATGCTCAAGAAGGTGAAACCATAAACCAATTGAACCAATTAAGCTTGAATAGAGACTCTGAAGCAGGCATCAGAAGGCTCGCTAGGGTTTCAGCACAGTTTCTTCCACCAGATGGTTCACGAATCGTTAAGATTCCTTCGAGTGACTATGAATTGCGATATTCGTTCTTGTCTCAGAGAGGTTACTACCCTGATGCTCTTGATAAGGCTAATCAAGATAGTTTCTGCATTCACACTCCATTTGGCAATAGCCCTGATGATCATTTCTTCGGGGTTTTCGATGGCCATGGAGAATTCGGAGCGCAGTGTTCGCAGTTCGTGAAGCAGAAGCTGTGTGAGAATTTGTTAAGGAATTCCAAGTTTCGTTTGGATGCTGTTGAGGCTTGTCACTCTGCGTTCTTGACAACGAATTCGCAGTTGCATGCTGATGTTTTGGATGATAGCATGAGTGGCACGACGGCGATCACGGTGTTGGTCAGGGGGAAGACGATATACGTGGCGAATTCCGGCGATTCGAGGGCGGTGATTGCGGAGAGGAGAGGGAAGGATGTTGTGGCTGTTGATTTGTCCATTGATCATACACCTTTTAGGCCTGATGAGCTTGAGAGGGTGAAGCTTTGTGGAGCTAGGGTTCTTACTTTGGATCAGATTGAAGGGTTGAAGGACCCTGATGTTCAGTGTTGGGGCACTGAAGAAGGTGATGATGGTGACCCTCCTAGGTTGTGGGTCCCCAATGGGATGTACCCGGGTACTGCTTTTACAAGGAGCTTAGGTGATTCTATTGCTGAGACTATTGGGGTTGTTGCTAACCCTGAGATTGTTGTCTTTGAGCTCACACAGAAACACCCCTTCTTTGTTCTTGCTAGTGATGGGGTGTTCGAGTTTCTGTCTAGCCAGACTGTGGTTGAAATGGTTGCAAAATTCAAAGATCCTCGTGATGCTTGTGCTGCCATAGTGGCGGAATCTTATCGACTTTGGCTCCAGTATGAAACTCGTACAGATGATATTACAATCATCATTGTGCATATAAATGGGCTACCTGAACTTGCCGATGGTCAGTCAGCAAGTTATAATGATGTTTCACGAACCCCAGTGCCTCAAGTTGTAGAGGTGACAGGTTCAGAATCTCCTTCCACCTTTGGCTGGAACTCTAGGAACCATCGAGTAAGACATGACTTGTCAAGGGCACGCCTCCGAGCAATTGAAAATTCCCTAGAGAATGGGCAAGCTTGGGTTCCTCCATCTTCAGCCCACAGGAAGACATGGGAGGAAGAAGCACACATAGAGCAGGCGTTGCATGATCATTTCCTCTTCCGAAAACTTACTGATTCTCAGGGTCATGTTTTATTGGATTGCATGCAAAGAGTTGAGGTCCAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAAGTCTTGGCGACTCAGGAAGAAAAAGATGGGGAGGTACCTAGGGTTTTGCAGCGCTATACAGCTGAAAAACTATCATGCTTTGGAGAACTTGCTCTAATGTACAATAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACACTCTGGGCTTTAAAGCGAGAAGATTTTAGAGGGATTTTAATGTCAGAATTCTCTAACTTATCGTCCTTGAAGATGCTTCGGTCTATAGATCTCCTCTCAAAATTGTCAATATTACAACTGAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAGCGGGCAGACAATAATTGATGAAAATGAAGTCCTTGCATTGTACATTATCCAGAAGGGACGAGTGAAAATCACTTTCGATTCTGATTTATTGACGAGTCCAAATGCCTGCAGCCTCAAGCCTGACATCCAAAATGAGGATGATGATTTGCAGAGCAGAAGAGAACTGTCAATAGAGAAGCCTGAGGCAAGCTATTTTGGTGAATGGGCCCTTCTTGGTGAACATATTGGTTCCTTAAGTGCTGTTGCCGTTGGTGACGTTGTATGTGCTTTACTAACAAAGGAAAAATTTGAATCAGTTATTGGCTCCTTACCAAAGATTTCTCAGGAAGATCAGAAGTCGATGGATAATTCCAAGGAGTTGGCTGGAAGTTTTGACTTTTCATCCCTAGATAAAGTCCAGTTCTCAGATTTGGAGTGGAGAAAGACCCTATATTCCACTGACTGCTCTGAGATTGGGCTTGCAAATTTGAGAGACTCGGAAAATTTGCTTACTTTGAAGAGATTTTCTAAGCCAAAGGTGAAAAAGCTAGGAAAGGAATCACAAGTCTTGAAAGAGAGAGATTTGATTAAGGGTATGAGCTGTTCAGCTTGTATACCACAGGTTTTATGCACTTTTGCTGACCGCATATATGCTGGAATACTGCTAAATACACGTCTCGCTTGCCCTTTGTCTACCATACTTTCAAGTCCTTTTGGTGAATCAGCAGCGCAGTTTTGCGCTGCTTCTGTCATTACTGCCTTAGAAGATTTGCACAAGAATGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGAGCAAACAGGACGGATACAGCTGGTGGACTTCAGATTTGGAAAGAAACTCTTTGGTGAAAGAACATTCACAATATGTGGGATGGCAGATTCACTAGCTCCCGAGATTATTTTGGGAAAAGGCCATGGTTTCCCCGCTGACTGGTGGGCGTTGGGAGTTTTAATATATTTTATGTTAAGGGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACAGTTGCCAAAATTGCAAAACGGAAGCTAAATATTCCAGAAACTTTCAGCCCTGAAGCTGTTGATCTCATCTCCAAGTTACTTGAAGTGGATGAAAACACTAGACTTGGTAGCCAAGGTACTGATTCTGTCAAGAGTCACCCATGGTTTAATGGAGTTGAATGGGAAGGGATTAGACACCACACATTTCCTGTTCCTCAGGAAATTATTTCTCGTATAACACAACACTTAGAAGTTCATTCTGAGGATTGTACTAGTGGTTCTCTGGGGTCCCCATTACATGATGAGTTAGAAGAACTTAACGTGCCTGAATGGCTTGAGGACTGGTAG 3243 0.4391 MGCIYSKVCIGDTCKGSSVNEDPIVRTGTGEVVLAGDFSPSGFSDAQEGETINQLNQLSLNRDSEAGIRRLARVSAQFLPPDGSRIVKIPSSDYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPDDHFFGVFDGHGEFGAQCSQFVKQKLCENLLRNSKFRLDAVEACHSAFLTTNSQLHADVLDDSMSGTTAITVLVRGKTIYVANSGDSRAVIAERRGKDVVAVDLSIDHTPFRPDELERVKLCGARVLTLDQIEGLKDPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSLGDSIAETIGVVANPEIVVFELTQKHPFFVLASDGVFEFLSSQTVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITIIIVHINGLPELADGQSASYNDVSRTPVPQVVEVTGSESPSTFGWNSRNHRVRHDLSRARLRAIENSLENGQAWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQGHVLLDCMQRVEVQPGDIIVKQGGEGDCFYVVGSGEFEVLATQEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKMLRSIDLLSKLSILQLSQISDSLSEVSFSSGQTIIDENEVLALYIIQKGRVKITFDSDLLTSPNACSLKPDIQNEDDDLQSRRELSIEKPEASYFGEWALLGEHIGSLSAVAVGDVVCALLTKEKFESVIGSLPKISQEDQKSMDNSKELAGSFDFSSLDKVQFSDLEWRKTLYSTDCSEIGLANLRDSENLLTLKRFSKPKVKKLGKESQVLKERDLIKGMSCSACIPQVLCTFADRIYAGILLNTRLACPLSTILSSPFGESAAQFCAASVITALEDLHKNGVLYRGVSPDVLMLEQTGRIQLVDFRFGKKLFGERTFTICGMADSLAPEIILGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLNIPETFSPEAVDLISKLLEVDENTRLGSQGTDSVKSHPWFNGVEWEGIRHHTFPVPQEIISRITQHLEVHSEDCTSGSLGSPLHDELEELNVPEWLEDW 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1751g00008 1080 CDD PP2Cc 113 387 IPR001932 -
Gabi1751g00008 1080 CDD CAP_ED 607 739 IPR000595 -
Gabi1751g00008 1080 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 546 1038 - -
Gabi1751g00008 1080 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 597 746 - -
Gabi1751g00008 1080 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
Gabi1751g00008 1080 ProSiteProfiles Protein kinase domain profile. 745 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1751g00008 1080 SUPERFAMILY PP2C-like 86 391 IPR036457 -
Gabi1751g00008 1080 Gene3D Jelly Rolls 594 750 IPR014710 -
Gabi1751g00008 1080 SUPERFAMILY cAMP-binding domain-like 600 741 IPR018490 -
Gabi1751g00008 1080 PRINTS cAMP-dependent protein kinase signature 502 516 - -
Gabi1751g00008 1080 PRINTS cAMP-dependent protein kinase signature 726 738 - -
Gabi1751g00008 1080 PRINTS cAMP-dependent protein kinase signature 517 531 - -
Gabi1751g00008 1080 PRINTS cAMP-dependent protein kinase signature 552 561 - -
Gabi1751g00008 1080 Gene3D Phosphorylase Kinase; domain 1 766 851 - -
Gabi1751g00008 1080 CDD CAP_ED 481 590 IPR000595 -
Gabi1751g00008 1080 ProSiteProfiles cAMP/cGMP binding motif profile. 481 590 IPR000595 -
Gabi1751g00008 1080 ProSiteProfiles cAMP/cGMP binding motif profile. 607 747 IPR000595 -
Gabi1751g00008 1080 Gene3D Jelly Rolls 447 589 IPR014710 -
Gabi1751g00008 1080 SMART PP2C_4 89 385 IPR001932 -
Gabi1751g00008 1080 Pfam Protein kinase domain 784 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1751g00008 1080 SUPERFAMILY Protein kinase-like (PK-like) 759 1053 IPR011009 -
Gabi1751g00008 1080 Pfam Protein phosphatase 2C 124 366 IPR001932 -
Gabi1751g00008 1080 Gene3D - 90 388 IPR036457 -
Gabi1751g00008 1080 SMART cnmp_10 481 605 IPR000595 -
Gabi1751g00008 1080 SMART cnmp_10 607 745 IPR000595 -
Gabi1751g00008 1080 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 455 595 - -
Gabi1751g00008 1080 Pfam Cyclic nucleotide-binding domain 500 591 IPR000595 -
Gabi1751g00008 1080 Pfam Cyclic nucleotide-binding domain 626 730 IPR000595 -
Gabi1751g00008 1080 SMART serkin_6 775 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1751g00008 1080 Gene3D Transferase(Phosphotransferase) domain 1 852 1037 - -
Gabi1751g00008 1080 SUPERFAMILY cAMP-binding domain-like 462 591 IPR018490 -
Gabi1751g00008 1080 ProSiteProfiles PPM-type phosphatase domain profile. 97 387 IPR001932 -
Gabi1751g00008 1080 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 92 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1751g00008 Gabi-Chr1751 65617 74477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1751g00008 1 1080 PP2C-type Phosphatase Gene Family AT2G20050 69.000 0.0 1505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Gabi1751g00008 Pkinase 9.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1751g00008 - - gmx:100799821 1908.26