Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1751g00007 ATGAATCAACAACAACAACAACTTGGTGTTAGACTTTTGGTTCTCTCTATCTTATTCTTCCATGTTAGAGCACAGAGTCCACCTTCACAAGATGCTGTCTCTAATTTCCAACCAAGCCTTGCTGTTGTCATAGGAATCCTTGGTCTCATGTTTACACTAACATTCATTCTTCTCATGTATGCTAAATTCTGTCAACGCAGAGTTTCAGTTCCTCTTGGGGACCCAGAAAATCAACTACCAATTGGAAGATCAAGGTCTAGATTCTCAGGAATTGACAAGACTGTCATAGAATCACTCCCCTTCTTTAGATTCTCTTCCCTCAAAGGGTCAAGGGAAGGTCTTGAATGTGCTGTATGCTTATCAAAGTTTGAAGATGTAGAAATTCTAAGGCTTCTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATTGATCACTGGCTTGAACAACACTCAACCTGTCCTATTTGCAGGAACAAGGTCAATCCTGAGGACCAGACAATCTTCACATATTCAAGCAGTTTAAGGTTTCTAACAAACCATTCAGGGTTAGGTGAAGAATCTAACATAGAGCTCTTTATACAAAGAGAGGAAGAACCTCATGGTTCATCAAGGTTCAGTATTGGAAGCAGCTTTAGGAAAATTGGAAAGGATATTAAGGAAGAAGAATTGCCTATCAAAGAAGGAGAAGAAGAAGAAGAAGAAGATTGTGATGGTAACCAGAAGAGCTATCATAAACATAACCATAAAATCACTATATCTGATGTTGTTTTCAAGCATAGGTGGAGCAACGTGAGCTCTTCAGACCTCATGTTTTTGAATTCAGAGATGCTGAATGCTACATCAAGCAACAGATTCAATGACTTGGAATCAAATGCTGACATGATGCCAACTACAAGAGGAGTGCTAGAAAATGAGCAAATTATGAACATCAAGGAGGAGATGGAGAGGAAGATTTTCTTTGAGAGCAAAGTTGGTCCAATAAACAAGATTCAATCAGTTTCACATAAGGATCATCCTTTAACATCAGGTTCTGAAGCAAATACAAGTCATGCACAAAAGTATGTGAATCAAGGTGAGAAAAGATCAATGTCAGAAATCACTGCTGTCTCTAGATTTGGAGATTTAGCAATGAAAAATAGGGTCTTCAAAGATTCTTCTGTGCTTGAAAACAACCTTAAAGAGGAAAGAATGAGGGAGCTTTGGTTTCCAATAGCCAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAAGAAGGTCTCAGCAATCTCAGAATAAACAACCACCATTAGATGTATAA 1299 0.3826 MNQQQQQLGVRLLVLSILFFHVRAQSPPSQDAVSNFQPSLAVVIGILGLMFTLTFILLMYAKFCQRRVSVPLGDPENQLPIGRSRSRFSGIDKTVIESLPFFRFSSLKGSREGLECAVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEQHSTCPICRNKVNPEDQTIFTYSSSLRFLTNHSGLGEESNIELFIQREEEPHGSSRFSIGSSFRKIGKDIKEEELPIKEGEEEEEEDCDGNQKSYHKHNHKITISDVVFKHRWSNVSSSDLMFLNSEMLNATSSNRFNDLESNADMMPTTRGVLENEQIMNIKEEMERKIFFESKVGPINKIQSVSHKDHPLTSGSEANTSHAQKYVNQGEKRSMSEITAVSRFGDLAMKNRVFKDSSVLENNLKEERMRELWFPIARRTAQWFVNRERRSQQSQNKQPPLDV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1751g00007 432 FunFam RING-H2 finger protein ATL43 91 165 - -
Gabi1751g00007 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 418 - -
Gabi1751g00007 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 167 IPR013083 -
Gabi1751g00007 432 Pfam Ring finger domain 115 158 IPR001841 -
Gabi1751g00007 432 SUPERFAMILY RING/U-box 95 164 - -
Gabi1751g00007 432 CDD RING-H2_EL5-like 115 158 - -
Gabi1751g00007 432 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Gabi1751g00007 432 SMART ring_2 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1751g00007 Gabi-Chr1751 59287 60585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1751g00007 12 427 C3H Transcription Factor Family AT4G28890 47.534 8.15e-115 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1751g00007 K10664 - gmx:100803207 650.203