Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1750g00021 ATGGCATCAACATCTTGTGTCAGCAAGAGCCCATTACCCATGAAAGAGGTAGCTTCGAGCTATCGTGCGTATCCTCCTCCTCTAGCAACATATGAGGAGGTTGCTAACAATTCCAAGCTCTTCATGTCTACCTTGGAGAAGCTCCACGCTTCTATGGGTACCAAGTTCATGATTCCCATTATTGGGGGAAGAGAACTGGATTTGCATCGCCTCTTTGTTGAAGTGACCTCTCGTGGAGGGATTGCGAAGATAATTAGAGAGAGAAAATGGAAAGATGTTACTGCAGTTTTCAATTTTCCGTCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAATACTATGCTTCCTTGCTCTTCCATTATGAACAAATTTATTATTTTAGAGCCCATGAATGGGCCCCTACCACTTCCGATGGTTTGCAGAGTCAATCAACTGTCCCAGTTCCTGCTCAACAGATGCATTGTTCGCAGCCTTCTTCAGAAAGTCAACCAGCTGTCTTTCAACAGTCAAATGTTAATGCTGCCAGGCTACCTGAAGCAATGGCAGCATCTTCGGCTGGGTCTCCAGTCACTGGAGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACTGTTACAATAGGTTCAGAGAAGCTCAAAGGCGTACTTTATCAAGCTCCACAAAACCCTGTATTGCCAGTTTTCCATCATAGTGTTTCGGTTAATAACAACAATGCCTCTGCTTCATTGGGTGTCCATCGTCGCCGACGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGGTACAATTTCTTCTTTGCAGAACAGCATGCAAGACTAAAACCACTTCACCATGGGAAGGACAGGGTAATTAGCAGGATGATTGGTGAACTCTGGAACAAGTTAAACGAATCGGAAAAGGCAGTTTATCAAGAGAAGGCTGTGAAGGATAAAGAAAGGTACAGAGCAGAAATGGAAGATTATCGTGGGAAATTGAAGATGGGCCAAATTATCAGTGATGCTGTGCCACTTCAACAACGACTTCCCGAACCAGATACAGACATGTTGGATGCTGAGGCAGATTCTCCTCAGACTCCGGAGGAGAGCAGTTCTGGTGGAAGTGATTATGAAGATGATAAAGCTACAGAGAAAGATTTCGATATGGATGCATTGCCCGTTGTAGGAGTGGGTGCTGAATCTAGCTGTTTAGGTTCAGAAGAGAAGTCATCATCCAAGGGGGGTTTATGA 1257 0.4415 MASTSCVSKSPLPMKEVASSYRAYPPPLATYEEVANNSKLFMSTLEKLHASMGTKFMIPIIGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTAVFNFPSTATNASFVLRKYYASLLFHYEQIYYFRAHEWAPTTSDGLQSQSTVPVPAQQMHCSQPSSESQPAVFQQSNVNAARLPEAMAASSAGSPVTGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLPVFHHSVSVNNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHHGKDRVISRMIGELWNKLNESEKAVYQEKAVKDKERYRAEMEDYRGKLKMGQIISDAVPLQQRLPEPDTDMLDAEADSPQTPEESSSGGSDYEDDKATEKDFDMDALPVVGVGAESSCLGSEEKSSSKGGL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1750g00021 418 CDD HMG-box_AtHMGB9-like 265 331 - -
Gabi1750g00021 418 SMART bright_3 36 127 IPR001606 GO:0003677
Gabi1750g00021 418 Coils Coil 314 334 - -
Gabi1750g00021 418 SMART hmgende2 264 333 IPR009071 -
Gabi1750g00021 418 MobiDBLite consensus disorder prediction 243 272 - -
Gabi1750g00021 418 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Gabi1750g00021 418 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 373 - -
Gabi1750g00021 418 MobiDBLite consensus disorder prediction 355 418 - -
Gabi1750g00021 418 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Gabi1750g00021 418 SUPERFAMILY ARID-like 33 135 IPR036431 GO:0003677
Gabi1750g00021 418 MobiDBLite consensus disorder prediction 376 390 - -
Gabi1750g00021 418 Gene3D High mobility group box domain 249 343 IPR036910 -
Gabi1750g00021 418 MobiDBLite consensus disorder prediction 245 259 - -
Gabi1750g00021 418 FunFam High mobility group B protein 15 247 342 - -
Gabi1750g00021 418 FunFam High mobility group B protein 15 29 142 - -
Gabi1750g00021 418 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Gabi1750g00021 418 PRINTS High mobility group (HMG1/HMG2) protein signature 297 316 - -
Gabi1750g00021 418 PRINTS High mobility group (HMG1/HMG2) protein signature 316 336 - -
Gabi1750g00021 418 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Gabi1750g00021 418 Gene3D - 28 137 IPR036431 GO:0003677
Gabi1750g00021 418 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Gabi1750g00021 418 SMART ARID_2 32 122 - -
Gabi1750g00021 418 SUPERFAMILY HMG-box 253 336 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1750g00021 Gabi-Chr1750 82848 88063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1750g00021 1 366 ARID Transcription Factor Family AT1G04880 63.660 5.08e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi1750g00021 ARID 1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1750g00021 - - gmx:100807028 646.351