LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1749g00005	ATGGGTCATACAGGACATGTAAAGGGTGGTGAATGCGATGATCATTCAGACAAGGATAATGGGAAGTCCACTTTTGCTGAAAACATCGAAACAAATGAGAACTTGGTTTCCTTAGTTTTAGATAACAGGGATAAATCTTCAAAAGAACATTTACTTGATAATAATTTTTTACCCTTTAAGAGGAACAGGGTTTACTCAGCTGATAAGCATTTTGTGGGACACCTTCGTGAAAAGCAAGTTTGTATAAATGAATGTGATGATTTCTTAAGAAATACAAAGAGAATTAAATGTTATGCATCTACAAGTTTTGATTCCAAGAAAGAAAAAACTGTTTCTCAACTCGGAAAGGAAGTGTCAGAAAATTCAACTGAAAGAATTCTTCTAATTTCTGAGAAAGGAGAGCATCAAACAGAAAAGATTAACTGGGGAACTATGGGTGGTGGATCCATAGAGGATAGTCACAATAGGTGCACTGCTTCAAATTTGTGCCAATCCAGCAACCAAAATGAAGTCGTTCATGATGAATCAAATATTCCTTTCGATGCTACTTTGATGCCTCAGCATACATTTGGAGGTGAAAATTCTCAGCAAAAGCAGATTGAGTCAATTGCAACTGATGTTGCATGCCCAGATGAAATTCAGCATAAGATTTCTGGAAGTAAACCCTGGTCTAAACATGAAACAGATTTGCAGCTTGAAGATCCAAATGGCTCTCAGCAGACAGTTGCTAGTGATAAAGCTCAAGATGATACTGGTAATAGTTGGGTAGAAGTAACAGCTGATAAGATTGTGTATCAAGGTGAAAACATTAATGTTTTAATGAAAAAGTACGAAGAGCAGAATCTTGGTATGAAGTGTAAGGAAGTTGGTCAATTACTGTTTAGTGATGCGACTCCTGTCTCACTAGTGGTTCCTGAAAGTTGTGTTGGTATGGCAACCACCATTATGCCTCAGCATACATCTGGAGCTGAGCCTTGCCAAAATAAGTCTATGGATGAAAGCAATGATAATGCACATCATGTTTACCCTATTCCTTCAAATGGTGATAATGCCGATAAAATTCAGCATATGATTAATGAATCCCAACCCAAACAGAACGAACCAAATGTTGTACCTTTAAATTTCTCTCAGTCTCAGAAGCCCGTTGCTAGTGATAAAACTGTAGTTGCTACTTTTAATGGTTGTGAAGCTGAGTTATCAAGTGATAGTGATAGGTATCACAATGAAAAGATTGATCTTGCCGCCAAAAAACATGAATTCCTGAGCTCCCAGTGTACATATGTTCAAGGTTTCTCAGCAATGACTGAGTCGACTGAACAAAATCTTTGCATGAAGTGTAATGAACGTGGCCAATTACTAGTTTGTAAAACAACTACTTGCCCAATGATGGTGCATAAAAACTGTCTGGGTGTGTCTGCTCAATTGGACGGAAAAGGCAACTTTGTCTGCCCATTTTGTGTATATTCTGACACTATCTCAGAATATCTTGAAGCTAAGGAAAAAGCTTCCTTGGCAAGGAAAGAATTGGCTATCTTCATTAGTAAGGGAATAAGGAACCAAGCTGTTCATGAATTTCATAGACAAGAACATAGTCCTTCAAGAAAGAATAGCATGTTTATTCATGTCAATAACATCGGAAATGATGAGTTAACAGGGTGTGAAGACAATAGAGAATATCATGTTGGTGGGCATGCAAATGAAGTCAGTAATCTTCAGTTTGAAAGAAGTCAGCCACAAGCCCCTATATCATGTGTCCCCTCATCATGCAGAGAAAAGGAAAATGTAAATAATGGATTAATAGAAGCTTTAAGAGAAGAGGAAAGGAGTGAAATGCAGAATGCAAAGAGTTTAACTGGTGGAAGAGTTGAAGAAAACCAAGTGCTTACTGACCATGTAGATGGATGTGGTGGTGATAAATATTCTTGTAAAAAAGCAAATATTGTCTGTGATAGTCAAAGCAATGGTGGAGAAGAAGTTCCACAAGAACTGACGAAACAACACAATATGGATGGAACAGTAGAGCCAGTTTGTGCACATGATACTGGAAAAAAGGAAATTTCTGAAGATGGATGTGAAAAGCATATTATTTCTAGATATTCAATGAGATTCCGGAAGCATGAAACTCAATACAAACCCCAAGCAAGCCCTCTTTTAAGACGAAAGAAAATTCCATGGACAGCTGAGGAGGAAGAGCTGATAAGGGAGGGAGTGCAGAAGTTTGGTTCCAGTGACCAAACAATCCCGTGGAAGAAGATTTTGGCATTCGGTTCTCATGTGTTTGAGAAGGATGATAAGCGCCGTACGCCAGTAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTCACTCAAAATCGAAATGA	2364	0.382	MGHTGHVKGGECDDHSDKDNGKSTFAENIETNENLVSLVLDNRDKSSKEHLLDNNFLPFKRNRVYSADKHFVGHLREKQVCINECDDFLRNTKRIKCYASTSFDSKKEKTVSQLGKEVSENSTERILLISEKGEHQTEKINWGTMGGGSIEDSHNRCTASNLCQSSNQNEVVHDESNIPFDATLMPQHTFGGENSQQKQIESIATDVACPDEIQHKISGSKPWSKHETDLQLEDPNGSQQTVASDKAQDDTGNSWVEVTADKIVYQGENINVLMKKYEEQNLGMKCKEVGQLLFSDATPVSLVVPESCVGMATTIMPQHTSGAEPCQNKSMDESNDNAHHVYPIPSNGDNADKIQHMINESQPKQNEPNVVPLNFSQSQKPVASDKTVVATFNGCEAELSSDSDRYHNEKIDLAAKKHEFLSSQCTYVQGFSAMTESTEQNLCMKCNERGQLLVCKTTTCPMMVHKNCLGVSAQLDGKGNFVCPFCVYSDTISEYLEAKEKASLARKELAIFISKGIRNQAVHEFHRQEHSPSRKNSMFIHVNNIGNDELTGCEDNREYHVGGHANEVSNLQFERSQPQAPISCVPSSCREKENVNNGLIEALREEERSEMQNAKSLTGGRVEENQVLTDHVDGCGGDKYSCKKANIVCDSQSNGGEEVPQELTKQHNMDGTVEPVCAHDTGKKEISEDGCEKHIISRYSMRFRKHETQYKPQASPLLRRKKIPWTAEEEELIREGVQKFGSSDQTIPWKKILAFGSHVFEKDDKRRTPVDLKDKWKNMCKAHSKSK	787

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1749g00005	787	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	332	783	-	-
	Gabi1749g00005	787	MobiDBLite	consensus disorder prediction	218	232	-	-
	Gabi1749g00005	787	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	719	784	IPR017930	-
	Gabi1749g00005	787	SMART	PHD_3	442	487	IPR001965	-
	Gabi1749g00005	787	ProSiteProfiles	Zinc finger PHD-type profile.	440	489	IPR019787	-
	Gabi1749g00005	787	SMART	sant	721	782	IPR001005	-
	Gabi1749g00005	787	SUPERFAMILY	Homeodomain-like	724	785	IPR009057	-
	Gabi1749g00005	787	Gene3D	-	718	783	-	-
	Gabi1749g00005	787	MobiDBLite	consensus disorder prediction	1	24	-	-
	Gabi1749g00005	787	MobiDBLite	consensus disorder prediction	217	253	-	-
	Gabi1749g00005	787	MobiDBLite	consensus disorder prediction	1	26	-	-
	Gabi1749g00005	787	Pfam	Myb-like DNA-binding domain	724	778	IPR001005	-
	Gabi1749g00005	787	ProSitePatterns	Zinc finger PHD-type signature.	443	486	IPR019786	-
	Gabi1749g00005	787	ProSiteProfiles	Myb-like domain profile.	719	780	IPR001005	-
	Gabi1749g00005	787	SUPERFAMILY	FYVE/PHD zinc finger	436	490	IPR011011	-
	Gabi1749g00005	787	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	436	529	IPR013083	-
	Gabi1749g00005	787	MobiDBLite	consensus disorder prediction	233	253	-	-
	Gabi1749g00005	787	CDD	SANT_TRF	723	781	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1749g00005	Gabi-Chr1749	71269	77492	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Gabi1749g00005		Myb_DNA-binding	1e-07	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1749g00005	-		-	ccaj:109810464	954.125