Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1749g00004 ATGGATGATGATGAACCATCTGAATCTTCCTCAAAACTTCCATGGATTTGGGTCATTGAAGCCCTAGCAGGCTTCAGTGAAATCACTACATCCACTTTACAGGGTTTGATTGATGCATCCCCTATAGAGCAAGATGATTTTTGTGAAAATACAAAGGAATTGGTTGCTATGAGGTGTTTGGAGGAACTGTGTGTTAATCGTGATGCTTCTTCTACCTTGGATTCCAGAGTTGGATTTGATTTTTCACGAAGTTGTGTTGATGTTCTCCAAGAAATATTGCATGAGATACCATTATCAAATCTGAAAATGGCTGGAGCAGAGCTTTTGAGATGGGATGTTAGTTCATTTATTATGCACAAAAGATCTGGCACTATTAAATGTCACTTAGAGCAGCTGAAAGAATCAATATTGGAAGGCACTCAACCACATACTGATTACTTAAAAGAAAGGAGTGGATTATTCCTCCAGAATATGGGTCATACAGGACATGATAATGGGAAGTCCACTTTTGCTGAAAACATCGAAACAAATGAGAACTTGGTTTCCTTAGTTTTAGATAACAGGGATAAATCTTCAAAAGAACATTTACTTGATAATAATTTTTTACCCTTTAAGAGGAACAGGGTTTACTCAGCTGATAAGCATGAAACAGATTTGCAGCTTGAAGATCCAAATGGCTCTCAGCAGACAGTTGCTAGTGATAAAGCTCAAGATGATACTGGTAATAGTTGGGTAGAAGTAACAGCTGATAAGATTGTGTATCAAGGTGAAAACATTAATGTTTTAATGAAAAAGTACGAAGAGCAGAATCTTGGTATGAAGTGTAAGGAAGTTGGTCAATTACTGTTTAGTGATGCGACTCCTGTCTCACTAGTGGTTCCTGAAAGTTGTGTTGGTATGGCAACCACCATTATGCCTCAGCATACATCTGGAGCTGAGCCTTGCCAAAATAAGTCTATGGATGAAAGCAATGATAATGCACATCATGTTTACCCTATTCCTTCAAATGGTGATAATGCCGATAAAATTCAGCATATGATTAATGAATCCCAACCCAAACAGAACGAACCAAATGTTGTACCTTTAAATTTCTCTCAGTCTCAGAAGCCCGTTGCTAGTGATAAAACTGTAGTTGCTACTTTTAATGGTTGTGAAGCTGAGTTATCAAGTGATAGTGATAGGTATCACAATGAAAAGATTGATCTTGCCGCCAAAAAACATGAATTCCTGAGCTCCCAGTGTACATATGTTCAAGGTTTCTCAGCAATGACTGAGTCGACTGAACAAAATCTTTGCATGAAGTGTAATGAACGTGGCCAATTACTAGTTTGTAAAACAACTACTTGCCCAATGATGGTGCATAAAAACTGTCTGGGTGTGTCTGCTCAATTGGACGGAAAAGGCAACTTTGTCTGCCCATTTTGTGTATATTCTGACACTATCTCAGAATATCTTGAAGCTAAGGAAAAAGCTTCCTTGGCAAGGAAAGAATTGGCTATCTTCATTAGTAAGGGAATAAGGAACCAAGCTGTTCATGAATTTCATAGACAAGAACATAGTCCTTCAAGAAAGAATAGCATGTTTATTCATGTCAATAACATCGGAAATGATGAGTTAACAGGGTGTGAAGACAATAGAGAATATCATGTTGGTGGGCATGCAAATGAAGTCAGTAATCTTCAGTTTGAAAGAAGTCAGCCACAAGCCCCTATATCATGTGTCCCCTCATCATGCAGAGAAAAGGAAAATGTAAATAATGGATTAATAGAAGCTTTAAGAGAAGAGGAAAGGAGTGAAATGCAGAATGCAAAGAGTTTAACTGGTGGAAGAGTTGAAGAAAACCAAGTGCTTACTGACCATGTAGATGGATGTGGTGGTGATAAATATTCTTGTAAAAAAGCAAATATTGTCTGTGATAGTCAAAGCAATGGTGGAGAAGAAGTTCCACAAGAACTGACGAAACAACACAATATGGATGGAACAGTAGAGCCAGTTTGTGCACATGATACTGGAAAAAAGGAAATTTCTGAAGATGGATGTGAAAAGCATATTATTTCTAGATATTCAATGAGATTCCGGAAGCATGAAACTCAATACAAACCCCAAGCAAGCCCTCTTTTAAGACGAAAGAAAATTCCATGGACAGCTGAGGAGGAAGAGCTGATAAGGGAGGGAGTGCAGAAGTTTGGTTCCAGTGACCAAACAATCCCGTGGAAGAAGATTTTGGCATTCGGTTCTCATGTGTTTGAGAAGGATGATAAGCGCCGTACGCCAGTAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTCACTCAAAATCGAAATGA 2331 0.3844 MDDDEPSESSSKLPWIWVIEALAGFSEITTSTLQGLIDASPIEQDDFCENTKELVAMRCLEELCVNRDASSTLDSRVGFDFSRSCVDVLQEILHEIPLSNLKMAGAELLRWDVSSFIMHKRSGTIKCHLEQLKESILEGTQPHTDYLKERSGLFLQNMGHTGHDNGKSTFAENIETNENLVSLVLDNRDKSSKEHLLDNNFLPFKRNRVYSADKHETDLQLEDPNGSQQTVASDKAQDDTGNSWVEVTADKIVYQGENINVLMKKYEEQNLGMKCKEVGQLLFSDATPVSLVVPESCVGMATTIMPQHTSGAEPCQNKSMDESNDNAHHVYPIPSNGDNADKIQHMINESQPKQNEPNVVPLNFSQSQKPVASDKTVVATFNGCEAELSSDSDRYHNEKIDLAAKKHEFLSSQCTYVQGFSAMTESTEQNLCMKCNERGQLLVCKTTTCPMMVHKNCLGVSAQLDGKGNFVCPFCVYSDTISEYLEAKEKASLARKELAIFISKGIRNQAVHEFHRQEHSPSRKNSMFIHVNNIGNDELTGCEDNREYHVGGHANEVSNLQFERSQPQAPISCVPSSCREKENVNNGLIEALREEERSEMQNAKSLTGGRVEENQVLTDHVDGCGGDKYSCKKANIVCDSQSNGGEEVPQELTKQHNMDGTVEPVCAHDTGKKEISEDGCEKHIISRYSMRFRKHETQYKPQASPLLRRKKIPWTAEEEELIREGVQKFGSSDQTIPWKKILAFGSHVFEKDDKRRTPVDLKDKWKNMCKAHSKSK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1749g00004 776 SMART sant 710 771 IPR001005 -
Gabi1749g00004 776 ProSitePatterns Zinc finger PHD-type signature. 432 475 IPR019786 -
Gabi1749g00004 776 SUPERFAMILY Homeodomain-like 713 774 IPR009057 -
Gabi1749g00004 776 SUPERFAMILY FYVE/PHD zinc finger 425 479 IPR011011 -
Gabi1749g00004 776 ProSiteProfiles Zinc finger PHD-type profile. 429 478 IPR019787 -
Gabi1749g00004 776 MobiDBLite consensus disorder prediction 216 242 - -
Gabi1749g00004 776 Gene3D - 707 772 - -
Gabi1749g00004 776 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 708 773 IPR017930 -
Gabi1749g00004 776 SMART PHD_3 431 476 IPR001965 -
Gabi1749g00004 776 CDD SANT_TRF 712 770 - -
Gabi1749g00004 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 518 IPR013083 -
Gabi1749g00004 776 MobiDBLite consensus disorder prediction 222 242 - -
Gabi1749g00004 776 ProSiteProfiles Myb-like domain profile. 708 769 IPR001005 -
Gabi1749g00004 776 Pfam Myb-like DNA-binding domain 713 767 IPR001005 -
Gabi1749g00004 776 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 321 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1749g00004 Gabi-Chr1749 70351 77492 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi1749g00004 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1749g00004 - - gmx:102661885 790.801