Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1749g00003 ATGGATGATGATGAACCATCTGAATCTTCCTCAAAACTTCCATGGATTTGGGTCATTGAAGCCCTAGCAGGCTTCAGTGAAATCACTACATCCACTTTACAGGGTTTGATTGATGCATCCCCTATAGAGCAAGATGATTTTTGTGAAAATACAAAGGAATTGGTTGCTATGAGGTGTTTGGAGGAACTGTGTGTTAATCGTGATGCTTCTTCTACCTTGGATTCCAGAGTTGGATTTGATTTTTCACGAAGTTGTGTTGATGTTCTCCAAGAAATATTGCATGAGATACCATTATCAAATCTGAAAATGGCTGGAGCAGAGCTTTTGAGATGGGATGTTAGTTCATTTATTATGCACAAAAGATCTGGCACTATTAAATGTCACTTAGAGCAGCTGAAAGAATCAATATTGGAAGGCACTCAACCACATACTGATTACTTAAAAGAAAGGAGTGGATTATTCCTCCAGAATATGGGTCATACAGGACATGTAAAGGGTGGTGAATGCGATGATCATTCAGACAAGGATAATGGGAAGTCCACTTTTGCTGAAAACATCGAAACAAATGAGAACTTGGTTTCCTTAGTTTTAGATAACAGGGATAAATCTTCAAAAGAACATTTACTTGATAATAATTTTTTACCCTTTAAGAGGAACAGGGTTTACTCAGCTGATAAGCATTTTGTGGGACACCTTCGTGAAAAGCAAGTTTGTATAAATGAATGTGATGATTTCTTAAGAAATACAAAGAGAATTAAATGTTATGCATCTACAAGTTTTGATTCCAAGAAAGAAAAAACTGTTTCTCAACTCGGAAAGGAAGTGTCAGAAAATTCAACTGAAAGAATTCTTCTAATTTCTGAGAAAGGAGAGCATCAAACAGAAAAGATTAACTGGGGAACTATGGGTGGTGGATCCATAGAGGATAGTCACAATAGGTGCACTGCTTCAAATTTGTGCCAATCCAGCAACCAAAATGAAGTCGTTCATGATGAATCAAATATTCCTTTCGATGCTACTTTGATGCCTCAGCATACATTTGGAGGTGAAAATTCTCAGCAAAAGCAGATTGAGTCAATTGCAACTGATGTTGCATGCCCAGATGAAATTCAGCATAAGATTTCTGGAAGTAAACCCTGGTCTAAACATGAAACAGATTTGCAGCTTGAAGATCCAAATGGCTCTCAGCAGACAGTTGCTAGTGATAAAGCTCAAGATGATACTGGTAATAGTTGGGTAGAAGTAACAGCTGATAAGATTGTGTATCAAGGTGAAAACATTAATGTTTTAATGAAAAAGTACGAAGAGCAGAATCTTGGTATGAAGTGTAAGGAAGTTGGTCAATTACTGTTTAGTGATGCGACTCCTGTCTCACTAGTGGTTCCTGAAAGTTGTGTTGGTATGGCAACCACCATTATGCCTCAGCATACATCTGGAGCTGAGCCTTGCCAAAATAAGTCTATGGATGAAAGCAATGATAATGCACATCATGTTTACCCTATTCCTTCAAATGGTGATAATGCCGATAAAATTCAGCATATGATTAATGAATCCCAACCCAAACAGAACGAACCAAATGTTGTACCTTTAAATTTCTCTCAGTCTCAGAAGCCCGTTGCTAGTGATAAAACTGTAGTTGCTACTTTTAATGGTTGTGAAGCTGAGTTATCAAGTGATAGTGATAGGTATCACAATGAAAAGATTGATCTTGCCGCCAAAAAACATGAATTCCTGAGCTCCCAGTGTACATATGTTCAAGGTTTCTCAGCAATGACTGAGTCGACTGAACAAAATCTTTGCATGAAGTGTAATGAACGTGGCCAATTACTAGTTTGTAAAACAACTACTTGCCCAATGATGGTGCATAAAAACTGTCTGGGTGTGTCTGCTCAATTGGACGGAAAAGGCAACTTTGTCTGCCCATTTTGTGTATATTCTGACACTATCTCAGAATATCTTGAAGCTAAGGAAAAAGCTTCCTTGGCAAGGAAAGAATTGGCTATCTTCATTAGTAAGGGAATAAGGAACCAAGCTGTTCATGAATTTCATAGACAAGAACATAGTCCTTCAAGAAAGAATAGCATGTTTATTCATGTCAATAACATCGGAAATGATGAGTTAACAGGGTGTGAAGACAATAGAGAATATCATGTTGGTGGGCATGCAAATGAAGTCAGTAATCTTCAGTTTGAAAGAAGTCAGCCACAAGCCCCTATATCATGTGTCCCCTCATCATGCAGAGAAAAGGAAAATGTAAATAATGGATTAATAGAAGCTTTAAGAGAAGAGGAAAGGAGTGAAATGCAGAATGCAAAGAGTTTAACTGGTGGAAGAGTTGAAGAAAACCAAGTGCTTACTGACCATGTAGATGGATGTGGTGGTGATAAATATTCTTGTAAAAAAGCAAATATTGTCTGTGATAGTCAAAGCAATGGTGGAGAAGAAGTTCCACAAGAACTGACGAAACAACACAATATGGATGGAACAGTAGAGCCAGTTTGTGCACATGATACTGGAAAAAAGGAAATTTCTGAAGATGGATGTGAAAAGCATATTATTTCTAGATATTCAATGAGATTCCGGAAGCATGAAACTCAATACAAACCCCAAGCAAGCCCTCTTTTAAGACGAAAGAAAATTCCATGGACAGCTGAGGAGGAAGAGCTGATAAGGGAGGGAGTGCAGAAGTTTGGTTCCAGTGACCAAACAATCCCGTGGAAGAAGATTTTGGCATTCGGTTCTCATGTGTTTGAGAAGGATGATAAGCGCCGTACGCCAGTAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTCACTCAAAATCGAAATGA 2835 0.382 MDDDEPSESSSKLPWIWVIEALAGFSEITTSTLQGLIDASPIEQDDFCENTKELVAMRCLEELCVNRDASSTLDSRVGFDFSRSCVDVLQEILHEIPLSNLKMAGAELLRWDVSSFIMHKRSGTIKCHLEQLKESILEGTQPHTDYLKERSGLFLQNMGHTGHVKGGECDDHSDKDNGKSTFAENIETNENLVSLVLDNRDKSSKEHLLDNNFLPFKRNRVYSADKHFVGHLREKQVCINECDDFLRNTKRIKCYASTSFDSKKEKTVSQLGKEVSENSTERILLISEKGEHQTEKINWGTMGGGSIEDSHNRCTASNLCQSSNQNEVVHDESNIPFDATLMPQHTFGGENSQQKQIESIATDVACPDEIQHKISGSKPWSKHETDLQLEDPNGSQQTVASDKAQDDTGNSWVEVTADKIVYQGENINVLMKKYEEQNLGMKCKEVGQLLFSDATPVSLVVPESCVGMATTIMPQHTSGAEPCQNKSMDESNDNAHHVYPIPSNGDNADKIQHMINESQPKQNEPNVVPLNFSQSQKPVASDKTVVATFNGCEAELSSDSDRYHNEKIDLAAKKHEFLSSQCTYVQGFSAMTESTEQNLCMKCNERGQLLVCKTTTCPMMVHKNCLGVSAQLDGKGNFVCPFCVYSDTISEYLEAKEKASLARKELAIFISKGIRNQAVHEFHRQEHSPSRKNSMFIHVNNIGNDELTGCEDNREYHVGGHANEVSNLQFERSQPQAPISCVPSSCREKENVNNGLIEALREEERSEMQNAKSLTGGRVEENQVLTDHVDGCGGDKYSCKKANIVCDSQSNGGEEVPQELTKQHNMDGTVEPVCAHDTGKKEISEDGCEKHIISRYSMRFRKHETQYKPQASPLLRRKKIPWTAEEEELIREGVQKFGSSDQTIPWKKILAFGSHVFEKDDKRRTPVDLKDKWKNMCKAHSKSK 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1749g00003 944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 685 IPR013083 -
Gabi1749g00003 944 MobiDBLite consensus disorder prediction 375 389 - -
Gabi1749g00003 944 SUPERFAMILY Homeodomain-like 881 942 IPR009057 -
Gabi1749g00003 944 SMART PHD_3 599 644 IPR001965 -
Gabi1749g00003 944 ProSiteProfiles Myb-like domain profile. 876 937 IPR001005 -
Gabi1749g00003 944 ProSitePatterns Zinc finger PHD-type signature. 600 643 IPR019786 -
Gabi1749g00003 944 ProSiteProfiles Zinc finger PHD-type profile. 597 646 IPR019787 -
Gabi1749g00003 944 CDD SANT_TRF 880 938 - -
Gabi1749g00003 944 MobiDBLite consensus disorder prediction 390 410 - -
Gabi1749g00003 944 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 876 941 IPR017930 -
Gabi1749g00003 944 SMART sant 878 939 IPR001005 -
Gabi1749g00003 944 Gene3D - 875 940 - -
Gabi1749g00003 944 SUPERFAMILY FYVE/PHD zinc finger 593 647 IPR011011 -
Gabi1749g00003 944 MobiDBLite consensus disorder prediction 374 410 - -
Gabi1749g00003 944 Pfam Myb-like DNA-binding domain 881 935 IPR001005 -
Gabi1749g00003 944 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 489 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1749g00003 Gabi-Chr1749 70351 77492 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi1749g00003 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1749g00003 - - ccaj:109810464 1144.8