Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1748g00002 ATGATTAACTGGGTTGTCGAGCTTTCCGAGTTCGTCATATCGTATGAACCTCGACAGGCAATTAAGTCGCAAACTTTGGCAGACTTCATCCTGGAGCTAACCCCGCCCAATGAAAAGGGAGAAGGGAATGAAGGTCTCTGGACAATTTATGTCGACGGATCCTCGAACTCTAAGGGGAGTGGAGCCGGGGTGATTGTTGAAAGCCCGGAAGGAGTGTCCATCGAGCACTCCCTCCACTTAGCATTTCCGACCTCGAAGAACCAAGCTGAATACGAGGCATTCATTGCCGAGATCGTGCAGGCAAAGGAGCACGGAGCAAGGAAGATAAAAATAATGAGTGATTCACAGCTGGTTACTTCACAAGTTGAAGGAAAATACCAAGCCAAGGGTCCTCTCATGATGAAGTACCTCCAACGGGTCAGGGAGCTATTAGTTGAGTTTGACGAGGTAACAATCCAGTGGTCAGCAATAGCAGCAAAATTACCAGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCCACTTGAAGAAGAGGGCATTGAAAACCAACCAACTCAATTCAGAGAGCAAAATAGTTTCAAAACCAAAAATCATGCAATCTGATTCCAATTCCAGCACACCAACTCAATCAGAACAATCCAGTCTTTATTACACTGAAATGGAGACTACATCAGCATGCAATTCTTCTAGTGATTTTTCATCACTCACCAATATTAGTGAAGGAAAACATATGAACAAGAACACCATCATGAGTGAAGACATAGAGTCTCTTGAGACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAGACAACAACAATGAATGATGAAAGATCAACCATGCCATCACATTCTTGGACAATCTCAAATGAACTATCACCTCAATATCCATTTCATTCAGTGGATACCTTCCAACAGAGTTATGGTAATAGTTCAAACTTTGATGATGGCATGGATTTTTGGTATGACTTGTTCATCAGATCAGGGGAGTCAATAGAATTGCCAGAGTTCTAA 1020 0.4235 MINWVVELSEFVISYEPRQAIKSQTLADFILELTPPNEKGEGNEGLWTIYVDGSSNSKGSGAGVIVESPEGVSIEHSLHLAFPTSKNQAEYEAFIAEIVQAKEHGARKIKIMSDSQLVTSQVEGKYQAKGPLMMKYLQRVRELLVEFDEVTIQWSAIAAKLPGRTDNEIKNVWHTHLKKRALKTNQLNSESKIVSKPKIMQSDSNSSTPTQSEQSSLYYTEMETTSACNSSSDFSSLTNISEGKHMNKNTIMSEDIESLETMPEIDESFWSETTTMNDERSTMPSHSWTISNELSPQYPFHSVDTFQQSYGNSSNFDDGMDFWYDLFIRSGESIELPEF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1748g00002 339 ProSiteProfiles RNase H type-1 domain profile. 43 183 IPR002156 GO:0003676|GO:0004523
Gabi1748g00002 339 CDD RNase_HI_like 47 154 - -
Gabi1748g00002 339 Gene3D - 45 169 IPR036397 GO:0003676
Gabi1748g00002 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 181 IPR017930 -
Gabi1748g00002 339 MobiDBLite consensus disorder prediction 190 216 - -
Gabi1748g00002 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 153 282 - -
Gabi1748g00002 339 CDD SANT 151 177 IPR001005 -
Gabi1748g00002 339 SUPERFAMILY Ribonuclease H-like 45 154 IPR012337 -
Gabi1748g00002 339 Pfam Reverse transcriptase-like 51 154 IPR002156 GO:0003676|GO:0004523
Gabi1748g00002 339 SUPERFAMILY Homeodomain-like 150 185 IPR009057 -
Gabi1748g00002 339 ProSiteProfiles Myb-like domain profile. 138 177 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1748g00002 Gabi-Chr1748 22940 26038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1748g00002 153 331 MYB Transcription Factor Family AT3G23250 37.186 3.91e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi1748g00002 RVT_3 3.8e-12 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1748g00002 - K09422 gmx:100807569 217.238