Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1742g00002 ATGAACCTGAACCTGAAGCCGTTGTTCATGCCGCTCCAAAGGATGATAGGCTTCAGGAGAAATCTGAAATTCCACAACCCTGATGGTACGGTGGAACGATACAAGGCAAGATTGGTGATAGCTGGAAATCATCAAATCGCTGGGGAGGATTATAGTGAGACATATGCACCGGTGGCCAAAATGGTGAGTGTTCGTACACTACTTGCCGTAGCAGCTGCCATGAATTGGGAGCTACACCAACTCGACGTCCACAATGCCTTCTTGAATGGAGACCTAAGTGAAGAAGTTTACATGTGGTTTCCTCCCGGATTCAGCAATGGCTCCAATCACAAAATTATACCCTCTTTACTCTCCAAAGAGGGTATAATCTGCCCTAGCAGTGTCCTAGTTTACGTTGATGATATAATAGTGGCAGGGAATGATCCTAATGCATGTAAAGCAGTCAAGGAGTATCTGAACCAATGCTTTAAAATCAAAGACTCAGGTCCGCTGAAGTATTTCCTGGGTATCGAAATTGCTCGTAGCAAGGAAAGCATATTACGTAAGTATACTTTAGACCTCCTTTCTGAATCAGGTCTGAGTGGGAGTAAGCCTTCGAACTCTCCCATCGAACAGAATCTTTGCCTCGCCTTGGATGATGGCCCAGTTTTTGACAACCCTGAACGGTATCGAAGACTTATAGGTAAACTAATTTACCTCACCATCACTCGACCTGATTTGAGTTATGCCATCCATATTTTATCGCAGTTTATGCAACAACCCAAGCAAGCTCACTTTGAAGCTGTAGTCCGTGTACTTCGGTATATCAAAAGGGACCCTGGCCGAGGCTTACTTCTCAAGTCCGATTGTAACTTAAAGATTCATGCTCACTACGACTCGGATTGGGCATCTTGTCCTCTCACTCGCAAATCAATTACTGCACGCAACTCTTTTGTTGATCATCTTTTCGCTCATCTCTCTAGGAAAGGTATTTTTGCCTTTAAGGATGATAAACGGCTCGAGAAAGGAGAACCCATTTCATCACAGCTTTTACAAGCAATTCATGATTCACGGGTTTCTATCGTTGTCTTCTCCCCTGATTATGCTTCTTCAAAATGGTGTTTGGATGAAATGGCTTCTATAAATGCATGCCGTATAAATTTTGAACAAACTGTTTTCTCAATTTTCTATCATGTGGATCCATCTCATGTAAGACATCAGAATGGGGTTTATGAGGATGCCTTTCTTTTACACACTGAAAAATTCAAACAAGATCTATCCATGGTTAATCGATGGCGGGAAGCTATGGAGGATTTGGCAGGATTAGCTGGTTGGGATGTCAGGAATAAGCCAGAGTCTGAAGCTGTTGAAAATATTGCTCAGGAGATAATAAATATATTGGGTCATAAATTCTCAGGATTTTTTGATGAGGTTATTGGGATGCAACCTCATGTAGCAACATTAGAAAGCATTTTAGAACTAAGGACACCGGAGGATAAATTTCGAGTTTTGGGAATTTGGGGGATGAGTGGAATAGGAAAAACAACTCTTGCTAATGCTTTGTATGATAGAATCTCTTATCAGTTTGACGCTTGCTGTTTTATTGAGGATGTTAGCAAAATTTATAGAGATGGTGGTGCTGTTGCCGTGCAGAAACAAATTCTTCGTCAAACTCTAAAAGAAGATCTAGACAAATGCAGTCCTTCCGAAATATCAGCAAGCCTAAGAAATAGGCTACATAAGATAAAGGTCCTTGTAGTTCTTGACAATGTTGATGAATTCAAGCAATTGCAAGAATTAGCTATAAATCCTAAATTGCTTCGCGCAGGAAGTAGAATGATTGTAACCACTAGAGATGAGCATATTCTTAAAGTGTATGAAGCGAATAAAATTTATGAGGCTCAACTGATGAAAGATAATGACGCTCGTCAACTTTTATGCAGAAAAGCCTTCAAAAGTGATGATTCAAAGAGCAATAGCAATTATGATGAGTTGATCCCTATGGTACTAAAATATGCTGAAGGCCTTCCATTAGTAGTTGGTGTAGTGGGTACTTTCTTGTGTAAACGAGGTGTTCCCCAGTGGAAAGATACCTTGAATAGATTGAAGAATAGTCCAGACAAAAAAATTATGGAGTTGCTTCGTGCAAGTGTTGATGGACTACAAGATGAGGAGAAAGAAATATTTCTGCACATTGCTTGTTTCTTTAGAGGGGAAAGAGAGGATTATGTAATGCGAATTCTAGATGCTTGTGGATTACACCCTCACATTGGAATAGAACGTTTGACTCAGATGTCACTCATAATCATTAAAAATAAAAAAATTCACATGCATGAAATTTTGCAAGAATTGGGGAAGTATATGGTTCGGCATCAATTTCCTAAAGAGCCAGGGTCGTGGAGTAGATTGTGGCGTCACCGGGATTTCCATCATGTCTTGATGACAAAAACGGGAACTGACAAGGTTGAAGCTATAGTTCTAGAGGAAAAAGATGTTACTGAATACTCTCAGATGAGTGCGTTTGCGGAAGGATTGTCGAAGATGACAGGTCTTACATTGCTTATATTAAATGATATGAATTTTTTAGGAGACCTGAATTTTCTTTCTTACCACCTGCAATATCTTATGTGGCACGGTTACCCTTTCACTTCTTTGCCATCCAATTTTGAGCCCCATGGTCTTGTTGAATTGAATATGCGTAATAGCAGCATCCAACGACTGTGGGACGGCCGCAAGGATCTTCCCTCTTTAAAAAGGATAGATTTAAGCAACTCTAAAAATCTTATCGAAACTCCAATCATTGATGGGATTCCAGAGCTTGAGCGGTTAGATCTCACAGGATGTACAAACCTACACCATGTCGATCCATCAATTGGAATTTTGAGTAAACTTGCTTTCTTGAGTTTGCAAAACTGTAGCAGTCTGGTTGTCCTTGATTTTGGCAGTTCCTCTAATTTAAGTTCTATGAAAGTTCTGGAGCTCTCTGGTTGCACAAAACTTGAAAACATCCCATATTTTACTGGGGCATCGAATCTTGAGTACCTTGATTTTGATCAATGTACTAGTTTATCTACGGTTCATCCATTAATATGGATTTGTACAAAGCTTAGATTCTTGAGTTGTAGAGACTGCACAAGTCTTTTGAGTATAGACTCTGGGGGTTACTTCATGCTATCTCTTATAACTCTAGATTTACATGGCTGCTCTGAACTTAGAAAAATTCCCGGGAAACAGTATTTATTTTTTTCTATGGGCTTTTCAGCTTTGATTCTTCTAGATTTAGGCTTTTGCAATCTAAGTGAAGTACCCGATGGTATTGAAGAGTTGAGATGTTTAGAAAGACTAAATCTAGAGGGAAATAACTTTTTTTCATTACCTTCTATGATCAGCAGCCTTCACAGGCTAGCATATTTAAACTTGGCGCATTGCCATGAGCTTCAATCTTTATCTGATCTTCCGTTTCCATGGGAAAGAGGTTCATCTGTGGGAAGGTATTTTGAAACGGAATCCAAATCTCGTGATTATAGGTCTGGATTATATATATTTGATTGCCCCAAGCTGGCTTTGGCTGCTAGGTTGTGGGACTCTGCATTTGACTGGCTTCGATGCCTAATTGAGTTAGAGAGTCATATGATCAACTCTTTGAAAGTGAGATCAAATCTGAACCATTGGATGGACAAAAATATGGATGGACAGCAATGCAATTTCTTGGAGCTCTTTAGTTTCTAG 3708 0.3978 MNLNLKPLFMPLQRMIGFRRNLKFHNPDGTVERYKARLVIAGNHQIAGEDYSETYAPVAKMVSVRTLLAVAAAMNWELHQLDVHNAFLNGDLSEEVYMWFPPGFSNGSNHKIIPSLLSKEGIICPSSVLVYVDDIIVAGNDPNACKAVKEYLNQCFKIKDSGPLKYFLGIEIARSKESILRKYTLDLLSESGLSGSKPSNSPIEQNLCLALDDGPVFDNPERYRRLIGKLIYLTITRPDLSYAIHILSQFMQQPKQAHFEAVVRVLRYIKRDPGRGLLLKSDCNLKIHAHYDSDWASCPLTRKSITARNSFVDHLFAHLSRKGIFAFKDDKRLEKGEPISSQLLQAIHDSRVSIVVFSPDYASSKWCLDEMASINACRINFEQTVFSIFYHVDPSHVRHQNGVYEDAFLLHTEKFKQDLSMVNRWREAMEDLAGLAGWDVRNKPESEAVENIAQEIINILGHKFSGFFDEVIGMQPHVATLESILELRTPEDKFRVLGIWGMSGIGKTTLANALYDRISYQFDACCFIEDVSKIYRDGGAVAVQKQILRQTLKEDLDKCSPSEISASLRNRLHKIKVLVVLDNVDEFKQLQELAINPKLLRAGSRMIVTTRDEHILKVYEANKIYEAQLMKDNDARQLLCRKAFKSDDSKSNSNYDELIPMVLKYAEGLPLVVGVVGTFLCKRGVPQWKDTLNRLKNSPDKKIMELLRASVDGLQDEEKEIFLHIACFFRGEREDYVMRILDACGLHPHIGIERLTQMSLIIIKNKKIHMHEILQELGKYMVRHQFPKEPGSWSRLWRHRDFHHVLMTKTGTDKVEAIVLEEKDVTEYSQMSAFAEGLSKMTGLTLLILNDMNFLGDLNFLSYHLQYLMWHGYPFTSLPSNFEPHGLVELNMRNSSIQRLWDGRKDLPSLKRIDLSNSKNLIETPIIDGIPELERLDLTGCTNLHHVDPSIGILSKLAFLSLQNCSSLVVLDFGSSSNLSSMKVLELSGCTKLENIPYFTGASNLEYLDFDQCTSLSTVHPLIWICTKLRFLSCRDCTSLLSIDSGGYFMLSLITLDLHGCSELRKIPGKQYLFFSMGFSALILLDLGFCNLSEVPDGIEELRCLERLNLEGNNFFSLPSMISSLHRLAYLNLAHCHELQSLSDLPFPWERGSSVGRYFETESKSRDYRSGLYIFDCPKLALAARLWDSAFDWLRCLIELESHMINSLKVRSNLNHWMDKNMDGQQCNFLELFSF 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1742g00002 1235 Gene3D - 303 465 IPR035897 -
Gabi1742g00002 1235 Gene3D Ribonuclease Inhibitor 1073 1216 IPR032675 -
Gabi1742g00002 1235 Gene3D Ribonuclease Inhibitor 974 1072 IPR032675 -
Gabi1742g00002 1235 Pfam NB-ARC domain 491 701 IPR002182 GO:0043531
Gabi1742g00002 1235 Pfam TIR domain 306 460 IPR000157 GO:0007165
Gabi1742g00002 1235 SUPERFAMILY DNA/RNA polymerases 31 295 IPR043502 -
Gabi1742g00002 1235 PRINTS Disease resistance protein signature 977 993 - -
Gabi1742g00002 1235 PRINTS Disease resistance protein signature 496 511 - -
Gabi1742g00002 1235 PRINTS Disease resistance protein signature 666 680 - -
Gabi1742g00002 1235 PRINTS Disease resistance protein signature 571 585 - -
Gabi1742g00002 1235 SUPERFAMILY L domain-like 783 1145 - -
Gabi1742g00002 1235 Pfam Leucine Rich Repeat 887 903 IPR011713 -
Gabi1742g00002 1235 SUPERFAMILY Toll/Interleukin receptor TIR domain 309 438 IPR035897 -
Gabi1742g00002 1235 Gene3D - 468 624 IPR027417 -
Gabi1742g00002 1235 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 16 111 IPR013103 -
Gabi1742g00002 1235 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 128 203 IPR013103 -
Gabi1742g00002 1235 Gene3D Ribonuclease Inhibitor 799 973 IPR032675 -
Gabi1742g00002 1235 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 307 993 IPR044974 GO:0006952
Gabi1742g00002 1235 SMART till_3 287 435 IPR000157 GO:0007165
Gabi1742g00002 1235 Gene3D - 630 719 IPR042197 -
Gabi1742g00002 1235 ProSiteProfiles TIR domain profile. 293 460 IPR000157 GO:0007165
Gabi1742g00002 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 725 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1742g00002 Gabi-Chr1742 64102 70637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1742g00002 470 1100 WRKY Transcription Factor Family AT5G45050 32.489 4.82e-83 295