Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1737g00002 ATGACCGGGCTGTGCTCCCGAGTTAATTCTGTGGTACATAACTCCTTTTACAGAACCACAAGTTTTCCTCTTCTCCTAGTCTCGCTGTTACTGTTCTCTTCACACCCGTTACAAACAATTATGGATAACATGAGAGCTATTATTCTCTTCCACCTCTATGCTTGGTTGCTATGCTTTTCTCAGCCACCATTACCATGTTTAGCAAGAGATACTTTAAACGCAGGCGAGAAGATAATAGGCAATGAAACTACCCTTGTATCAGCAGGAAAAAAATTTGAACTAGGCTTCTTTTTCCCTGTTGGAAACATCACTGGCGTCAAAGGAAGATACTTAGGGATATGGTATTACCGGCAAGATGGCTCAGAACCATACACAGTTGTGTGGGTTGCAAATAGAGACAAACCTGTAACTGTTGATTCTACTGGAGTTTTTCAAATTGCCAAAGATGGGAATCTTGTAGTAGCAGATACATCATCTGGGAAGAAGAACTACTGGTCATCCGAACTTAAAAACTCTTCATCCGCGAATAAGACAGTGAAGTTGATGGATTCTGGGAACCTAGTGTTACTAGATGAAGACTTGGGAATAAAACTATGGCAGAGCTTTGAACACCCAACCGATACGTTCTTGCCAGGAATGAAGATGGATAAGAATTTGGGATTGACTTCTTGGAGAAGTCTTGAAGATCCAGGAAGTGGGAGCTTCACTTTTAAGATGGCTCAAACAAGTGATCACACCCGTTTCATCATCTTAAACAATGACCAACTTCACTGGGAGAGTGAAGATCAACAGTACTCATCAAATTCAGAAGCAACCCCTGGTGACATAAGCATTGAAGTTTACTTTTTGTTGACCAACTTCACTACCCTAATAGCAAAGAACCTAAGTCTCATGAGCTATGAGAACACGAGGCTGTTTATTAATTCTACCGGTGTGATACAATTTAAGGTGAGGGGTAATTTCCAAGAGGAATCCAGTCAATGGCTGCAGCCCAAAACCATGTGTTTGATATATAATAATTGTGGGAATTTTTCTAGCTGTAATGACAATGACAGGATATGCAAGTGTTTGCCTGGATTTGATCCAATGTCTCCTCAAAATGATGTCATCACGAGAGAGGGAGATTCTTCTCTACAAGGCAAGGGATGTATCAGAAAAACAGCATCATGTGCAAAAGACGCCACATTCTTGAACTTGGTCATGATGAAAATAAGAAGCCCGGATAAAAAGGTAACAGCAGCAAACGAATCAGAATGCCAATCTATGTGCCTTAACACGTGTCCCCAGTGCGAAGCTTATTCATATGCTACACCTACTACACGGCGTGATCTTAATCCCACCACCTGTTGGATCTGGACACACAATTTAACTACTCTTGTAGAAGAGTACCTTGATGGTGATGATCGTAAGCTCTTTGTTCGGGTAGACAAATCAGACATAGAACCGACTCCAAAAACTTGTGAGCCTTGTGGAACAAACATAGTCCCTTATCCGCTGAGCACTGGACCAAGTTGTGGTGACCCAAATTACTTCAAGTTCAGCTGCAACAACTCAACAGGTCAGCTTAGCTTCTTCCCGAACACCACCGACCAAACCTACCCAATTACTAGCATGGACCCAGATTCGAAAAAGTTCTCTATTCTGCTTTCTCAGGACTATTCTTTCAATCGTTATTGCGGTGAAAGAGAGAAAAATCTCAGTATTTCTTCACCGTTTAGTAACGACAACCTGTGCTCTAACCAATTAGAGGTCAGTTGGCAACCACCGTCCGAACCCACTTGTGCAGAGTCCATTGATTGCCTCGGTTGGAAACATTCAACTTGCAAAGGAAACAGGTGTCTTTGCGATGCAAACTATTATTGGCATGGCGATCTCTTGAGTTGTACAGAAAAAGCTATATCCTCTTCTAATCCTATTCCTACTATAGAAGATTCAACAAGAAAAGGAAACTCCAAAAGCTCACTGTCTTTGACTCTTAGCCTAAGTCTTACAGGAGTGGTTATTCTAGCATGCACACTTATTTTTGCTTATGTATGCAGAAGAAAAATAGCTCTTAAGCAAGACAGGGAAAACATACAGAGAAATAGAGGGCGCTTTTATGACAGTGAAAGACATGTAAAAGATTTGATAGACATGGAGGGATTACAAGAACAGGACAATGAAGGCATAGAGGTTCCCTATTTTGATTTTGAGAGCATTTTAGTTGCTACGGATCACTTCTCAGAAGCAAATAAGCTTGGGAAAGGGGGTTATGGGCCAGTTTACAAGGGTAAGCTTCAAGGTGGTCAAGATATTGCGGTAAAGAGGCTCTCAAGTGTTTCATCACAAGGCTTACAGGAATTCAAGAATGAGGTTGTTTTAATTGCCAAACTTCAACATAGGAACCTTGTTAGATTGCGGGGCTATTGCGTAAAAGGAGAAGAAAAAATATTACTTTATGAATATATGCCTAACAAGAGCTTAGACTTATTTATATTCGATGCAACACAAAGTGTACTTTTGGATTGGCCTATGCGGTTTGACATAATTCTTGGAGTTGCTCGTGGTCTTCTTTATCTTCACCAAGACTCTAGACTGAGAGTAATTCATAGAGATTTGAAAACCAGCAACATTCTTCTAGATGGAGAGATGCAACCAAAGATTTCAGATTTTGGATTGGCAAGAATATTTGGACCTAAAGAGACCGAGGCAAACACGGAGAGGGTAGTGGGGACTTATGGATACATGTCTCCTGAATATGCATTGGATGGACTTTTTTCAATCAAATCAGATGTTTTCAGCTTTGGTGTGGTTCTGCTTGAGATTATTAGTGGGAAGAAGAACACGGGATTCTATCAATCTAATTCAAGCCTTTTGGGTTATGCTTGGAGATTATGGGAAGAGAACAAGTTACTAGATTTAATGGATTTATCTCTAGGTGAAACTTGCAATCCAGACCAATTTGTTAGGTGCGCACGTATTGCACTCTTATGTGTACAAGATGAACCAGATGATCGACCAACCATGTCAAATATTTTGACAATGCTTGACAGTGAGACTATAACTCTTCCAATCCCTAAACAAGCAACATTTTTTGCACGTAAAGATCTACCCAGCACATCTTCTTCAAGTGTGCGGTTTGAGAGTAGCACTCAAGAAGGTCGATAG 3147 0.4074 MTGLCSRVNSVVHNSFYRTTSFPLLLVSLLLFSSHPLQTIMDNMRAIILFHLYAWLLCFSQPPLPCLARDTLNAGEKIIGNETTLVSAGKKFELGFFFPVGNITGVKGRYLGIWYYRQDGSEPYTVVWVANRDKPVTVDSTGVFQIAKDGNLVVADTSSGKKNYWSSELKNSSSANKTVKLMDSGNLVLLDEDLGIKLWQSFEHPTDTFLPGMKMDKNLGLTSWRSLEDPGSGSFTFKMAQTSDHTRFIILNNDQLHWESEDQQYSSNSEATPGDISIEVYFLLTNFTTLIAKNLSLMSYENTRLFINSTGVIQFKVRGNFQEESSQWLQPKTMCLIYNNCGNFSSCNDNDRICKCLPGFDPMSPQNDVITREGDSSLQGKGCIRKTASCAKDATFLNLVMMKIRSPDKKVTAANESECQSMCLNTCPQCEAYSYATPTTRRDLNPTTCWIWTHNLTTLVEEYLDGDDRKLFVRVDKSDIEPTPKTCEPCGTNIVPYPLSTGPSCGDPNYFKFSCNNSTGQLSFFPNTTDQTYPITSMDPDSKKFSILLSQDYSFNRYCGEREKNLSISSPFSNDNLCSNQLEVSWQPPSEPTCAESIDCLGWKHSTCKGNRCLCDANYYWHGDLLSCTEKAISSSNPIPTIEDSTRKGNSKSSLSLTLSLSLTGVVILACTLIFAYVCRRKIALKQDRENIQRNRGRFYDSERHVKDLIDMEGLQEQDNEGIEVPYFDFESILVATDHFSEANKLGKGGYGPVYKGKLQGGQDIAVKRLSSVSSQGLQEFKNEVVLIAKLQHRNLVRLRGYCVKGEEKILLYEYMPNKSLDLFIFDATQSVLLDWPMRFDIILGVARGLLYLHQDSRLRVIHRDLKTSNILLDGEMQPKISDFGLARIFGPKETEANTERVVGTYGYMSPEYALDGLFSIKSDVFSFGVVLLEIISGKKNTGFYQSNSSLLGYAWRLWEENKLLDLMDLSLGETCNPDQFVRCARIALLCVQDEPDDRPTMSNILTMLDSETITLPIPKQATFFARKDLPSTSSSSVRFESSTQEGR 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1737g00002 1048 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 171 1034 - -
Gabi1737g00002 1048 SMART blect_4 76 205 IPR001480 -
Gabi1737g00002 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 861 873 IPR008271 GO:0004672|GO:0006468
Gabi1737g00002 1048 Gene3D - 66 203 IPR036426 -
Gabi1737g00002 1048 SUPERFAMILY Protein kinase-like (PK-like) 722 1031 IPR011009 -
Gabi1737g00002 1048 SMART serkin_6 740 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1737g00002 1048 CDD STKc_IRAK 746 1010 - -
Gabi1737g00002 1048 Pfam D-mannose binding lectin 125 219 IPR001480 -
Gabi1737g00002 1048 Pfam Protein tyrosine and serine/threonine kinase 743 1008 IPR001245 GO:0004672|GO:0006468
Gabi1737g00002 1048 CDD B_lectin 78 205 IPR001480 -
Gabi1737g00002 1048 ProSiteProfiles Protein kinase domain profile. 740 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1737g00002 1048 Gene3D Phosphorylase Kinase; domain 1 704 815 - -
Gabi1737g00002 1048 SUPERFAMILY alpha-D-mannose-specific plant lectins 126 229 IPR036426 -
Gabi1737g00002 1048 ProSiteProfiles Bulb-type lectin domain profile. 69 202 IPR001480 -
Gabi1737g00002 1048 CDD PAN_AP_plant 389 475 - -
Gabi1737g00002 1048 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 816 1017 - -
Gabi1737g00002 1048 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 705 815 - -
Gabi1737g00002 1048 Gene3D Transferase(Phosphotransferase) domain 1 816 1017 - -
Gabi1737g00002 1048 FunFam Receptor-like serine/threonine-protein kinase SD1-8 64 202 - -
Gabi1737g00002 1048 Pfam PAN-like domain 390 457 IPR003609 -
Gabi1737g00002 1048 ProSiteProfiles PAN/Apple domain profile. 390 476 IPR003609 -
Gabi1737g00002 1048 Pfam S-locus glycoprotein domain 299 363 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1737g00002 Gabi-Chr1737 18857 23200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1737g00002 634 1027 Receptor kinase-like Gene Family AT4G05200 50.000 6.02e-126 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1737g00002 PK_Tyr_Ser-Thr 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1737g00002 - - tpra:123882048 1250.73