Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1731g00002 ATGGCTTGTAAGAGAGTTGATATCTCTATTTTGGTTGTGGATGATGATGAAACTTCTTGGCCATCGTTGCTAATGTACTCATCTCATGGGAGTATAAAGGATGTTGCAATATCATCATTGACTGAGCCTAAGAGAAAAAGAAAGTATAGTAAGAGAAAGAGAACTCAAACGAACAAGGAAGAGAGCTCCTTTCCTATTCCAAAGAAACCAAAGATTGTTTGGACAACATACCTTCACAATCTGTTTCTGCTTGCCATAAAACAAATTGGATTTGAAAGGGCCGTGCCAAAGAAAATTCTCGAAATCATGAATGTGCCAAACTTGACAAGAGAAAATATTGCCAGTCACTTGCAGAACTATCGCATTTTCCTGAGAAAAGTTGCAGAAAGAGGAATAATTGAGGGCTTATCTGAGAGGACTCTAAGGTCAAGGTTTGGTTCTGGGCTTTCAGCTTTAATGATCAAAGAAATCCAAACAAGAACAGAGAAACTATGTGTTCCTGGGCAACAATATTTGAAAAGATTAGCACATCAAAAAGGAATCAAAGAGATTGTCAATGATGTTCATGATAAACAAGTTTCAAGAAGTGCTTATAATATGCCCTCGACAAGTTTCAACATGGGATCTTTGAGCACCTCTAATCTGCCCTCGACTTGTACTTCTTATCTTAGCAGTAACTCCTCTGTAGTTCAACTGAATGGTGGATCAAAAACTGTTGGGACTGGGAACAATGATAGTTTTGGCTTGATTAATGAGACTCAAAATGCAAATATGGATGTAGCAAACTTGGGGAATGTAAATTTTGGTTTGGTACAAAGAGGGCTTGCTTCTACTTCTGGTTCTAATGTTGGGAATGATTTTATAAGTGAGCTTCCAACAACATTGATGACTAATGGAACTCGAGAAGAAAATATTCCAGGGATCCCACAATTACCTCAGCAACTAGATGACAATGTTGTAGAAAATGAGCATAAATATAATGCCACTTCAATATGTGATAATGAGATCATCAGCAGCCAACTGGAAGACGATCTTTCTGAGCTTTTCTTGATGGTAGATGATATGCAACTTCTTAATAATGAGACAGAAGAGAACCCTGATGCAAGTGAATTTTTAAATTCTGACTTTTCTAGCTCTAGTCAGGTTGTGCAATCATTTGAGCAGTCTAATAGTAGAGCTGGTGATGATGTCATTGTGTTGCCAACTAAAGACACATTAAACTTTCCAAACGAGTCTTCAACAAGCTCTGACAAAAATTCTATTCAGATGCAAGGCAACGAGGAATCTGGGGACTGGGAACACTTTGATAGGTTCTTAGTGGACAATGTTTCTTCAGCAATTAACTCAACTTCTGAGCAGGATTGGGATATGGACATCATTGAAGCTTTGTTTGGTACCGATGTAAATTAA 1410 0.378 MACKRVDISILVVDDDETSWPSLLMYSSHGSIKDVAISSLTEPKRKRKYSKRKRTQTNKEESSFPIPKKPKIVWTTYLHNLFLLAIKQIGFERAVPKKILEIMNVPNLTRENIASHLQNYRIFLRKVAERGIIEGLSERTLRSRFGSGLSALMIKEIQTRTEKLCVPGQQYLKRLAHQKGIKEIVNDVHDKQVSRSAYNMPSTSFNMGSLSTSNLPSTCTSYLSSNSSVVQLNGGSKTVGTGNNDSFGLINETQNANMDVANLGNVNFGLVQRGLASTSGSNVGNDFISELPTTLMTNGTREENIPGIPQLPQQLDDNVVENEHKYNATSICDNEIISSQLEDDLSELFLMVDDMQLLNNETEENPDASEFLNSDFSSSSQVVQSFEQSNSRAGDDVIVLPTKDTLNFPNESSTSSDKNSIQMQGNEESGDWEHFDRFLVDNVSSAINSTSEQDWDMDIIEALFGTDVN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1731g00002 469 MobiDBLite consensus disorder prediction 404 427 - -
Gabi1731g00002 469 Pfam Myb-like DNA-binding domain 74 121 IPR001005 -
Gabi1731g00002 469 Gene3D - 66 128 - -
Gabi1731g00002 469 FunFam Two-component response regulator 66 128 - -
Gabi1731g00002 469 NCBIfam myb-like DNA-binding domain, SHAQKYF class 69 122 IPR006447 GO:0003677
Gabi1731g00002 469 MobiDBLite consensus disorder prediction 405 427 - -
Gabi1731g00002 469 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 46 376 IPR044841 GO:0003700|GO:0006355
Gabi1731g00002 469 MobiDBLite consensus disorder prediction 44 64 - -
Gabi1731g00002 469 SUPERFAMILY Homeodomain-like 67 126 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1731g00002 Gabi-Chr1731 93286 96954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1731g00002 41 145 Response Regulator Gene Family AT5G07210 53.333 3.27e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi1731g00002 Myb_DNA-binding 2.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1731g00002 - K14491 gmx:102662017 246.514