Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1726g00102 ATGCAAGAACCAAACTTGGGAATGATGGGTGGTGGTTTAAGCGGAGACGGCGACCACCACCACCGTCAACTGAAGGCGGAGATAGCCACTCATCCACTTTATGAACAGCTTCTAGCTGCCCATGTGGCTTGTCTCAGAGTTGCCACTCCCATCGATCAGCTTCCACTGATTGACGCTCAGTTATCTCAGTCTCATCATCTTCTACGCTCTTATATCTCTCACCACACTCATTCCCTTTCACCTCATGACCGTCAAGAACTTGATAACTTCCTGGGACAATATTTGTTGGTTTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTCAGAGTCCATGCCGTCGAGGCTGTTATGGCTTGCCGTGATATTGAGAATACCTTACAAGCTCTCACAGGAGTAAGTTTGGGAGAAGGAACTGGTGCAACTATGTCAGATGATGAAGATGATTTGCAGATGGATTTTTCTTTAGATCAGTCTAGCGCTGAAGGGCATGACATGATGGGATTTGGTCCGTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGCCAGGAGCTAAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTCAGGGAGGAAATATTAAGAAAACGAAGAGCTGGGAAATTACCAGGTGACACAACTTCAGTGTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTATCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATTAACCAAAGGAAACGAAACTGGCACAGCAACTCTCAATCGGTTACCTCTTTGAAGTCCAAGCGCAAGAGATTGTAG 861 0.4483 MQEPNLGMMGGGLSGDGDHHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISHHTHSLSPHDRQELDNFLGQYLLVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1726g00102 286 ProSiteProfiles 'Homeobox' domain profile. 208 271 IPR001356 GO:0003677
Gabi1726g00102 286 SMART KNOX2_2 77 132 IPR005541 GO:0003677|GO:0005634
Gabi1726g00102 286 Gene3D - 207 281 - -
Gabi1726g00102 286 ProSiteProfiles ELK domain profile. 188 208 IPR005539 GO:0003677
Gabi1726g00102 286 CDD homeodomain 211 272 IPR001356 GO:0003677
Gabi1726g00102 286 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 272 - -
Gabi1726g00102 286 Pfam KNOX1 domain 24 65 IPR005540 GO:0003677|GO:0005634
Gabi1726g00102 286 SMART KNOX1_2 22 66 IPR005540 GO:0003677|GO:0005634
Gabi1726g00102 286 SMART HOX_1 210 275 IPR001356 GO:0003677
Gabi1726g00102 286 SUPERFAMILY Homeodomain-like 210 275 IPR009057 -
Gabi1726g00102 286 FunFam homeobox protein knotted-1-like 3 isoform X1 209 270 - -
Gabi1726g00102 286 Pfam KNOX2 domain 80 131 IPR005541 GO:0003677|GO:0005634
Gabi1726g00102 286 Pfam Homeobox KN domain 228 267 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1726g00102 Gabi-Chr1726 917374 922415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1726g00102 1 284 Homeobox Transcription Factor Family AT1G62990 80.822 9.10e-175 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi1726g00102 KNOX2 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1726g00102 - - gmx:100808872 531.946