Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1726g00096 ATGGCATCCATTCTTCAAGCTTGTACTTTCTTGTTGCTTGCTTTCACATTCATGGGAAATCCAACACTAACTGTGGGAATATTTCGACCCAGTCCATGGGCTCTTGCACATGCCACATTTTATGGTGATGAGACTGCTTCTGCCACCATGGGAGGAGCGTGTGGGTACGGGAATTTGATTCAGAATGGTTACGGGACAGACACAGCGGCTTTAAGCTCGACATTGTTCAACAATGGTTATGCGTGCGGGACTTGTTATCAAATAAAATGCTACCAATCCAGAGCATGCTATAATAATGTACCCTTCACCACGGTCACTGCCACCAATCTTTGCCCTCCTAATTGGTCAGAACCCTCCGATGATGGTGGTTGGTGCAATCCACCACGAGTGCATTTTGACATGTCCAAGCCTGCTTTCATGAAAATTGCTCAGTGGACTGCTGGCATTGTCCCTGTTATGTACCGCAGAGTGCCATGTGGAAGGAAGGGGGGGCTTCAATTCTCTTTGCAAGGAAATGGGTACTGGCTACTGGTGTATGTGATGAATGCGGGAGGTGGAGGAGATATATCAAGCATGTGGGTGAAAGGAAGCAGAACAGGATGGATTAGCATGAGCCATAACTGGGGTGCTTCTTACCAAGCATTTGCAACACTCGGTGGACAAGCTCTTTCTTTCAGGATTACTTCATACACCACCAAGGAGACTATTATTGCTTGGAATGTTGCTCCTTCTAATTGGAACGTGGGACTTACTTATTCCACCACTGTCAACTTCCGCTGA 780 0.4679 MASILQACTFLLLAFTFMGNPTLTVGIFRPSPWALAHATFYGDETASATMGGACGYGNLIQNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSRACYNNVPFTTVTATNLCPPNWSEPSDDGGWCNPPRVHFDMSKPAFMKIAQWTAGIVPVMYRRVPCGRKGGLQFSLQGNGYWLLVYVMNAGGGGDISSMWVKGSRTGWISMSHNWGASYQAFATLGGQALSFRITSYTTKETIIAWNVAPSNWNVGLTYSTTVNFR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1726g00096 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 164 IPR007112 -
Gabi1726g00096 259 PANTHER EXPANSIN-A15 13 254 IPR002963 GO:0009664
Gabi1726g00096 259 SMART dpbb_1 68 154 IPR007112 -
Gabi1726g00096 259 SUPERFAMILY Barwin-like endoglucanases 32 182 IPR036908 -
Gabi1726g00096 259 CDD DPBB_EXPA_N 32 159 - -
Gabi1726g00096 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Gabi1726g00096 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Gabi1726g00096 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Gabi1726g00096 259 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Gabi1726g00096 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Gabi1726g00096 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Gabi1726g00096 259 Pfam Lytic transglycolase 68 154 IPR009009 -
Gabi1726g00096 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Gabi1726g00096 259 Gene3D - 22 159 IPR036908 -
Gabi1726g00096 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 254 IPR007117 -
Gabi1726g00096 259 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Gabi1726g00096 259 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Gabi1726g00096 259 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Gabi1726g00096 259 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Gabi1726g00096 259 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Gabi1726g00096 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Gabi1726g00096 259 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Gabi1726g00096 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Gabi1726g00096 259 Gene3D - 164 259 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1726g00096 Gabi-Chr1726 866703 867901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1726g00096 10 259 Expansin Gene Family AT1G12560 66.800 5.60e-125 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1726g00096 - - gmx:100807807 487.263