Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1726g00089 ATGAGAAGACACAGTCAAATTCATCTCTCTCATGCTCTGTTGTGTGCCATCCTGTGTTTGCTTTGGTCTGTTGTCACGGTCTCACCGGCAACTGAGAAGGAGATTTTACTTCAATTCAAGGGTAACATCACGGATGATCCCCGCAACAGCTTGAGTTCGTGGGTTTCAAGTCGAAACCCTTGCCAAGATTACATCGGTGTTTCTTGTAACTTGGAAGGATTTGTAGAAAGAATCGTCCTTTGGAACACTAGCTTGGGTGGGGTTTTGTCCCCAGCATTGTCGGGGTTGAAGAGGTTGAGGATATTGACATTGTTTGGGAATCGCTTCTCCGGTAATTTCCCAGAAGGATATGCTGATCTTCACTCGTTGTGGAAGATCAATTTGAGCTCCAATGCGTTATCTGGTTCAATCCCTGAGTTCATAGGTGATTTGCCTAGCATTCGCTTTCTAGATTTATCAAAGAATGGCTTCACTGGGGGGATACCTTCAGCATTGTTTAGGTACTGTTACAAAACCAAGTTCGTTTCTCTTTCTCATAACAATCTTGTTGGTCCAATTCCTGACTCGTTGGTGAATTGCTCCAACCTCGAAGGATTTGATTTTTCCTTCAACAATCTGAATGGGGTTGTCCCTTCTCGACTTTGTGATATTCCTAGGTTATCATATGTATCTTTGAGAAGCAATGCCTTATCAGGGAGTGTGCAAGAGCACATTTCGGCATGCCAAAGTCTGACACATTTGGATTTTGGTAGTAATAGATTCACCGATTTGGCCCCATTCAGCATCTTTGGAATGCAAAATCTTACCTATTTCAATATATCGTATAATGGGTTTGAAGGACAAATTCCTGAGAACACTACCTGTAGTGAGAAATTAGAAATCTTTGATGCTTCGGGAAATAATTTGGATGGGGAGATTCCCTCCAGCATAACTAGATGCAAGAGCCTAAAGCTCTTGGCCTTGGAGTTGAATAGGCTGGAAGGGAGTATCCCAGTTGATATTCAGGAATTGCGAGGACTATTGGTTATCAAATTGGGTAATAATTCCATAAGTGGAATGATTCCCAAGGGTTTTGGCAACATTGAGCTACTTGAATTGCTGGATTTGCACAATCTAAACCTCACTGGCGGAATTCCAGTTGATATAAGCAATTGCAAGTTTCTTCTTGAGCTGGATGTTTCTGGTAATAACTTAGAGGGCGAGATTCCTCAGACCCTTTACAAAATGACAAACCTGGAAGCCCTTGATCTACATCATAACCAGCTTAATGGAAGCATCCCACCAAGCCTAGGAAACCTATCAAGGATCCAATACCTAGATCTGTCACATAATTCACTTTCTGGTTCAATCCCTCCTTCCCTTGGAAATTTGCAAAAATTGACACATTTTGATCTCTCATTCAACAATCTCTCCGGTGTCATTCCTAATATTGCAACCATACAGCGTTTTGGTGCATCTGCCTTTTCCAATAATCCTTTTCTCTGTGGTGTTCCTTTGGACACCTCTTGCTCAGCAAACGGAACTAGATCACCTTCAGCTCCTGGGAAGACTAAAGTTCTAAGTGTGTCTGCAATTGTTGCAATTGTTGCTGCAGCTGTAATTCTAACTGGGGTTTGTTTGGTGACCATCATGAATATTAGGGCTCGTCGTAGAAAAAAAGATGATGATCAGGTTATGATTGTTGAGAGCACACCTCCTGGATCATCAGAATCAAATGTTATAATTGGAAAGCTGGTACTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGACAAAGAGTCTTTGATTGGTGGCGGATCCATCGGCACAGTCTACAAAACTGATTTTGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATAAAAAACCAGGAGGAATTTGAGGTTGAAATTGGGAGACTAGGCAACCTTCAACACCCTAATTTAGTTGCTTTTCAAGGTTACTATTGGTCCTCTTCAATGCAGTTGATTCTATCAGAGTTTGTACCAAACGGGAATCTCTATGATAATCTACATGGGCTTGGCTATCCTGGAACCAGCACCAGTAGAGGCAATAGGGAATTGTTTTGGTCTAGAAGGTTCCAAATTGCAGTTGGAACAGCAAGAGCCCTTGCCTATCTCCACCATGACTGTCGACCTCCAATTCTTCATCTAAACCTTAAATCCTCTAACATACTTTTAGATGACAATTATGAAGCTAAGTTGTCTGATTATGGGCTAGGAAAGTTACTTCCCATATTGGATAATTACGGTCTGACCAAGTTCCATAATGCAGTTGGATACGTTGCACCAGAGTTGGCTCAAAGCATGAGACAGAGTGAGAAGTGTGATGTTTACAGTTTTGGGGTCATTCTTTTGGAGCTTGTTACAGGGAGGAAGCCTGTAGAAAGTCCAACCACAAATGAGGTGGTGGTTTTGTGTGAATATGTAAGAGGTTTATTGGAGACTGGCTCAGCTTCAAATTGCTTTGACAGAAATTTAATTGGCTTTGCTGAGAATGAATTAATTCAGGTTATGAGATTGGGACTCATTTGTACTTTGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAAGTCCTTAAGTCCATTACAAATGGATTGGAATCACATTAA 2667 0.4166 MRRHSQIHLSHALLCAILCLLWSVVTVSPATEKEILLQFKGNITDDPRNSLSSWVSSRNPCQDYIGVSCNLEGFVERIVLWNTSLGGVLSPALSGLKRLRILTLFGNRFSGNFPEGYADLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGGIPSALFRYCYKTKFVSLSHNNLVGPIPDSLVNCSNLEGFDFSFNNLNGVVPSRLCDIPRLSYVSLRSNALSGSVQEHISACQSLTHLDFGSNRFTDLAPFSIFGMQNLTYFNISYNGFEGQIPENTTCSEKLEIFDASGNNLDGEIPSSITRCKSLKLLALELNRLEGSIPVDIQELRGLLVIKLGNNSISGMIPKGFGNIELLELLDLHNLNLTGGIPVDISNCKFLLELDVSGNNLEGEIPQTLYKMTNLEALDLHHNQLNGSIPPSLGNLSRIQYLDLSHNSLSGSIPPSLGNLQKLTHFDLSFNNLSGVIPNIATIQRFGASAFSNNPFLCGVPLDTSCSANGTRSPSAPGKTKVLSVSAIVAIVAAAVILTGVCLVTIMNIRARRRKKDDDQVMIVESTPPGSSESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTDFEGGISIAVKKLETLGRIKNQEEFEVEIGRLGNLQHPNLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGLGYPGTSTSRGNRELFWSRRFQIAVGTARALAYLHHDCRPPILHLNLKSSNILLDDNYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQSMRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETGSASNCFDRNLIGFAENELIQVMRLGLICTLEDPLRRPSMAEVVQVLKSITNGLESH 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1726g00089 888 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Gabi1726g00089 888 ProSiteProfiles Protein kinase domain profile. 600 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1726g00089 888 Pfam Leucine rich repeat 98 156 IPR001611 GO:0005515
Gabi1726g00089 888 SUPERFAMILY Protein kinase-like (PK-like) 601 878 IPR011009 -
Gabi1726g00089 888 SUPERFAMILY L domain-like 167 498 - -
Gabi1726g00089 888 Gene3D Ribonuclease Inhibitor 29 167 IPR032675 -
Gabi1726g00089 888 Gene3D Transferase(Phosphotransferase) domain 1 677 887 - -
Gabi1726g00089 888 Gene3D Ribonuclease Inhibitor 168 506 IPR032675 -
Gabi1726g00089 888 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515
Gabi1726g00089 888 Pfam Leucine Rich Repeat 436 457 IPR001611 GO:0005515
Gabi1726g00089 888 Pfam Protein kinase domain 602 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1726g00089 888 PANTHER OS05G0588300 PROTEIN 208 335 - -
Gabi1726g00089 888 CDD STKc_IRAK 606 881 - -
Gabi1726g00089 888 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 168 506 - -
Gabi1726g00089 888 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 29 167 - -
Gabi1726g00089 888 FunFam Putative LRR receptor-like serine/threonine-protein kinase 577 676 - -
Gabi1726g00089 888 SUPERFAMILY L domain-like 75 211 - -
Gabi1726g00089 888 Pfam Leucine Rich repeat 241 256 IPR001611 GO:0005515
Gabi1726g00089 888 Gene3D Phosphorylase Kinase; domain 1 571 676 - -
Gabi1726g00089 888 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 677 887 - -
Gabi1726g00089 888 ProSiteProfiles Leucine-rich repeat profile. 411 434 IPR001611 GO:0005515
Gabi1726g00089 888 SMART LRR_typ_2 337 360 IPR003591 -
Gabi1726g00089 888 SMART LRR_typ_2 409 433 IPR003591 -
Gabi1726g00089 888 SMART LRR_typ_2 457 480 IPR003591 -
Gabi1726g00089 888 SMART LRR_typ_2 241 264 IPR003591 -
Gabi1726g00089 888 SMART LRR_typ_2 120 144 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1726g00089 Gabi-Chr1726 808318 811279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1726g00089 28 887 Receptor kinase-like Gene Family AT1G62950 66.513 0.0 1121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gabi1726g00089 Pkinase 1.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1726g00089 - - mtr:11437247 1521.14