Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1726g00056 ATGAATTCCATTCATCTCCTCCTTTCTCTGTTTCTATTGGTTGCATTTTCCAATCAGCATATGGTTTATGGAAATGCAGAGGTTAGAGTTCTGATGGACTTGAAATCCTCTCTGGACCCAGAAGGAAAGATCCTTAGCTCGTGGATCAGTGATGGTGATCCATGCAGTGGCTCGTTCCAAGGGATTGAGTGTAACGAGCACGGCAAAGTGGCCAACATCTCCTTGCAGGGAATGGGACTTTCAGGGTGGCTCTCTCCAGCTGTGGCTGAACTCAAATGCTTATCAGGCTTATATTTGCATTATAACAATCTTTCTGGTGAGATACCCACACAGATTTCAAATCTCACTGATCTGGTTGATCTCTATCTCGATGTTAATAATCTATCTGGAACCATTCCTCCTGAGGTCGGCAACATGGCTAGTCTTCAAGTGCTGCAGTTGGGCGATAACCAGTTGGTGGGTAATATACCTACACAGTTGGGTTCCTTGAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAATTAACAGGTCAAATTCCTCTTAGCTTGGGAAACTTAGAGAAGCTAAGCAGGCTAATTTTGAGCTTTAACAACTTCAGTGGTATGATTCCCGCAGCACTAGCCACTACTGCACATTTGGAAGTTCTAGATATTCAAAACAATTCTCTATCAGGGAATGTTCCTTCAGCATTGAAGAGACTTGGGCAAGGATTTCAAGGTGCAAACAACCCAAGGTTATGTGGAGTTGGGTTTTCTACTTTGAGATCTTGCAACAAAGATAAAGATTTAGACGTTAACCATATTTACACCTCAGATCAAGACCTATCCAAAAGTAGTAATCCTCCAAAGGCTCTTCCCGAGCCTGCAAATATCCAGCTGCATTGCAACCAGACCCATTGTTCAAAATCAAGAAGGTTTCCTCATACTGTCATCACAGCAAGTGTTATAACTATCACTCTCTCATTCATAGGCGCTGGATTTTTAACATTCATCAGATACCGCCGTCAAAAGCAGAGGATTAGGAATGCATCAAGTTCTTCTGAAGGGAAACTTAGTCCTGACCAGTCCAAAGAATTCTACAGCAAAAGTCCATCAGCACTTGCTAATGTTGAGTATTGTAATGGATGGTATCCATTGTCTGATGGTCAAAATGCTGGTGGATTATGTAATGAATATCTAAACCAATTTAGGTTTAATGTGGACGAGGTTGAATCTGCAACACATTACCTTTCAGAAGCCAATTTACTGGGTAAAAGCAAATTCTCAGCAGTTTATAAAGGAGTTCTCAGGGATGGTTCTCTTGTGGCAATTAGAAGCCTTAGCGTGACATGCTGCAAAACCGAGGAAGCTGAATTTGTAAAGGGGTTGAGCTTATTAACCTCACTGAGACATGAAAACCTTGTTAGGCTGAGAGGTTTCTGTTGCTCAAGTGGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTGTCTAAATATCTTGACATGGAGGATGGAAGTGGCAATGTGCTTGAGTGGTCCACAAGGGTTTCTATCATCAAGGGCATTGCAAAGGGTATTGGATATCTACACAGCAATGAAGCTAGCAAACCTACGATAGTACACCAGAATATTTCAGTGGAAAATGTTCTCCTTGACCATGAGTTTAACCCATTGATCATGGATGCTGGACTACCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACCTAGCTCCCGAATACATTACTACCGGACGCTTTACTGAGAAGAGTGACATATACGCATTTGGGGTTATTGTACTTCAAGTTCTATCTGGCAAGAAGACAATAGGTAGTTCAATAAGGATGGCAGTTGAGTCTTTCAGATTTGATGATTCTATTGACACAAATCTTAGGGGAAGATATTCTAAATCTGAAGCAGAGACCCTTTCAAAGCTTGCAATGTTGTGTACTCATGAGCTTCCTGACCAAAGACCAACCATGGCAGATGTGATTCAGGAGTTGAGCGTGTTTCCTGCTCATTCATGA 2052 0.4181 MNSIHLLLSLFLLVAFSNQHMVYGNAEVRVLMDLKSSLDPEGKILSSWISDGDPCSGSFQGIECNEHGKVANISLQGMGLSGWLSPAVAELKCLSGLYLHYNNLSGEIPTQISNLTDLVDLYLDVNNLSGTIPPEVGNMASLQVLQLGDNQLVGNIPTQLGSLKQLSTLALQYNKLTGQIPLSLGNLEKLSRLILSFNNFSGMIPAALATTAHLEVLDIQNNSLSGNVPSALKRLGQGFQGANNPRLCGVGFSTLRSCNKDKDLDVNHIYTSDQDLSKSSNPPKALPEPANIQLHCNQTHCSKSRRFPHTVITASVITITLSFIGAGFLTFIRYRRQKQRIRNASSSSEGKLSPDQSKEFYSKSPSALANVEYCNGWYPLSDGQNAGGLCNEYLNQFRFNVDEVESATHYLSEANLLGKSKFSAVYKGVLRDGSLVAIRSLSVTCCKTEEAEFVKGLSLLTSLRHENLVRLRGFCCSSGRGECFLIYDFATMGNLSKYLDMEDGSGNVLEWSTRVSIIKGIAKGIGYLHSNEASKPTIVHQNISVENVLLDHEFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKKTIGSSIRMAVESFRFDDSIDTNLRGRYSKSEAETLSKLAMLCTHELPDQRPTMADVIQELSVFPAHS 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1726g00056 683 Gene3D Ribonuclease Inhibitor 24 174 IPR032675 -
Gabi1726g00056 683 SUPERFAMILY L domain-like 27 234 - -
Gabi1726g00056 683 Gene3D Transferase(Phosphotransferase) domain 1 491 679 - -
Gabi1726g00056 683 Gene3D Ribonuclease Inhibitor 175 247 IPR032675 -
Gabi1726g00056 683 FunFam Protein NSP-INTERACTING KINASE 2 490 680 - -
Gabi1726g00056 683 SUPERFAMILY Protein kinase-like (PK-like) 391 677 IPR011009 -
Gabi1726g00056 683 FunFam Protein NSP-INTERACTING KINASE 2 382 489 - -
Gabi1726g00056 683 Gene3D Phosphorylase Kinase; domain 1 385 489 - -
Gabi1726g00056 683 CDD STKc_IRAK 417 676 - -
Gabi1726g00056 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 141 679 IPR046959 -
Gabi1726g00056 683 FunFam Protein NSP-INTERACTING KINASE 2 24 172 - -
Gabi1726g00056 683 Pfam Protein tyrosine and serine/threonine kinase 415 676 IPR001245 GO:0004672|GO:0006468
Gabi1726g00056 683 ProSiteProfiles Protein kinase domain profile. 411 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1726g00056 683 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1726g00056 Gabi-Chr1726 505057 507660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1726g00056 3 524 Miscellaneous Gene Families AT4G22730 55.472 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Gabi1726g00056 PK_Tyr_Ser-Thr 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1726g00056 - - gmx:100777169 1129.01