Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1726g00044 ATGAACACTTTTTCACATGTTCCTCCTGGCTTTCGTTTCCATCCCACTGATGAAGAACTTGTTGATTACTACCTTAGGAAAAAGATAGCTTCTAAAAGGATTGATCTAGATGTGATAAAAGATGTCGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAATTATGCAAAATAGGAACTGATGAACAAAATGAATGGTATTTCTTTAGTCATAAAGATAAGAAGTACCCAACTGGCACTCGCACCAATAGAGCAACAAAGGCAGGATTCTGGAAAGCTACAGGAAGGGACAAAGCAATTTACTCTAAGCATTGCCTTATTGGCATGCGAAAGACACTGGTGTTTTACCAAGGAAGAGCCCCCAATGGACAGAAATCTGACTGGATCATGCATGAGTACCGGCTCGAAACCAATGAAAACGGAACTACTCAGGAAGAAGGGTGGGTTGTATGTAGAGCTTTCAAGAAAAGAATGACAACAATGCGGAAAGTGGGGGACTATGAATCACCCTGTTGGTATGATGACCAAGTCATATTCATGCAAGAGCTTGAATCCCCAAGGCGAATTTCTCACCCTAATTATGCATCGTACCACCAACACTACCCCTGCAAGCAGGAGTTGGAATTGCAATACAATATACCCAATGACGCTTTCCTCCAACTTCCACAACTTGAAAGCCCTAAATTTCCTCAATCTGCAACCAGTTTAAGTTGCAGCCCAGTTGTCCCTTACGGCTTTGATAGCAATAACAATGGAAGTGCTTTGCAGTCGTCATCACTCACTCAAGAAGAACGCATACAGCGTTGCCAGCAACAAAATCTGCAATTGCTTTATGGTAGCAATGATCAAGCAGTAGAACTAGTGACGGATTGGCGAGTGCTTGACAAATTTGTTGCTTCTCAGCTCAGTCACGATCAAGAAGTTTCCAAGGAAGCCAGTTATTCCAATGTGGCTGAACAAAGTACTATGCTTGCAAATGAATCCAAAAACCCAGAAAACGGCAAGGAATATGCTTCAACATCAACATCCAGTTGCCAGATTGACCTGTGGAAGTGA 1056 0.4214 MNTFSHVPPGFRFHPTDEELVDYYLRKKIASKRIDLDVIKDVDLYKIEPWDLQELCKIGTDEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKHCLIGMRKTLVFYQGRAPNGQKSDWIMHEYRLETNENGTTQEEGWVVCRAFKKRMTTMRKVGDYESPCWYDDQVIFMQELESPRRISHPNYASYHQHYPCKQELELQYNIPNDAFLQLPQLESPKFPQSATSLSCSPVVPYGFDSNNNGSALQSSSLTQEERIQRCQQQNLQLLYGSNDQAVELVTDWRVLDKFVASQLSHDQEVSKEASYSNVAEQSTMLANESKNPENGKEYASTSTSSCQIDLWK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1726g00044 351 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Gabi1726g00044 351 FunFam NAC domain-containing protein 16 160 - -
Gabi1726g00044 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 301 - -
Gabi1726g00044 351 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Gabi1726g00044 351 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Gabi1726g00044 351 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Gabi1726g00044 351 MobiDBLite consensus disorder prediction 326 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1726g00044 Gabi-Chr1726 396871 400506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1726g00044 1 351 NAC Transcription Factor Family AT1G12260 55.325 1.10e-140 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1726g00044 NAM 4.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1726g00044 - - tcc:18606319 594.349