Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1726g00007 ATGGAGGAACATAATGAAGCACAAGATAACAGAGAACTCTACGCACTCTTGAATTTGTCCCCGGAAGCTTCCGATGAAGAAATCCGCAGAGCTTATCGTCAATGGGCACAAGTCTATCACCCTGATAAATACCAAGCTCCTCATATGAAAGATATTGCAACGGAGAACTTTCAACGCATATGTGAAGCGTATGAGATTTTGTCAGATCCAAATAAAAGGCAAATATATGATATCTATGGCATGGAAGGGTTGACCTCTGGTTTGGAACTTGGTCCAAGGCTGGATAAAGCTGAAGAGATCAAGGCAGAGCTGGAGAGACTGAAGAGGATGAAGGAACGGGAAAAAATGGCGTCACATTTTCGATCCTCTGGTACAATTCTGGTCAATATGTCTTTGCCACACTGTCTAAATGGTCATGGCCTCTTCAGAGGAATGGCTATGACAAGCGAAATTCAGTCTCAGTTATCAAAGCGTAATGCTGTTACAATTAGTGGCAATTTAGCAGTTGATGGAAAGGAAGGTGGTGGAGCTGCTACTGCTTTATTTAGGCATGAAATGTCAGAAGTCTCGTCAATAGAATTTGTGGCTTCAGCTGGTTTACGTGCACTAATTGGGGTGCAAACATCTCGTGCTCTATCATCACACTCAGCGGCAACAATGGGCGTAGCAATGTCTTTGAGAGATGGTTCCTTGAATCTTTCTAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATACAGCTTACCTTGGGACCACAATCATCTATAGCTGTGGGGTGGCAAAAGAAAGATGAGAAAAGATCTGCATCTGGAGAAGTCAAGTTTGGCACAAGTTCTTTTGAGACAGCAGTTCATTATACTCATCGCTTTTCTTCTAAATCACTTGGCTGCATCACGGGAAGAGTTGGGAGTTCTTCCCTTGAGATTGAAGTTGGTGGTGGGAGGAAGATATCCAAATTCAGCACTGTGCGCTGGTTGTATACAATAGGAATTCAGGGTATTTTCTGGAAATTTGAGCTCTATCGTGGGGGTCAGAAGTTAATTATTCCTATTTTGCTGACGAGGCATTTGAACCCTGTGTTTGCTACTGGAGCATTCGTTGTTCCAGCATCTGTTTACTTTGTTCTGAAGAAATTTTTTATTAAACCGTATTACCTTAGAAGGAATAAGCAAAAGGCTCTAGAGAAGGAAGGAAAAACTTCTGTTCAGGTTCAAGAAGCAAGGGCTGCCGCAGAGAAAGCTCAGAAATTACAACAAAATGTGGCAAATAGGAAAAGAAACAGGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCGCTGTATGGAAATCAAATAATTTTGAACAACTTGAATTCATCAAGTGAAACAAGTTTTGAATCAACTTCAGAAGTCATTGATGTTACAATACCTCTGAATTTTCTAGTTAATGACTCTGGCCTACTCAAGCTTCATGAAGGTGTTAAAAAATCAGGCATCATGGGTTTTTGTGATCCATGTCCGGGAGAACCTAAACAGTTGTATGTAGAGTACGCTTATGCTGGCAATCAACACAAGGTTTGGGTTGGTGATTATGAAGAATTACTGATACCCCAGGGCACCCACAGGATATAA 1623 0.4153 MEEHNEAQDNRELYALLNLSPEASDEEIRRAYRQWAQVYHPDKYQAPHMKDIATENFQRICEAYEILSDPNKRQIYDIYGMEGLTSGLELGPRLDKAEEIKAELERLKRMKEREKMASHFRSSGTILVNMSLPHCLNGHGLFRGMAMTSEIQSQLSKRNAVTISGNLAVDGKEGGGAATALFRHEMSEVSSIEFVASAGLRALIGVQTSRALSSHSAATMGVAMSLRDGSLNLSNLWTRQLSETASGHIQLTLGPQSSIAVGWQKKDEKRSASGEVKFGTSSFETAVHYTHRFSSKSLGCITGRVGSSSLEIEVGGGRKISKFSTVRWLYTIGIQGIFWKFELYRGGQKLIIPILLTRHLNPVFATGAFVVPASVYFVLKKFFIKPYYLRRNKQKALEKEGKTSVQVQEARAAAEKAQKLQQNVANRKRNRQLETGGLVIMRALYGNQIILNNLNSSSETSFESTSEVIDVTIPLNFLVNDSGLLKLHEGVKKSGIMGFCDPCPGEPKQLYVEYAYAGNQHKVWVGDYEELLIPQGTHRI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1726g00007 540 Pfam DnaJ domain 13 77 IPR001623 -
Gabi1726g00007 540 SUPERFAMILY Chaperone J-domain 9 83 IPR036869 -
Gabi1726g00007 540 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Gabi1726g00007 540 Coils Coil 93 117 - -
Gabi1726g00007 540 PANTHER CHAPERONE PROTEIN DNAJ 13 1 540 IPR042162 -
Gabi1726g00007 540 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
Gabi1726g00007 540 CDD DnaJ 12 69 IPR001623 -
Gabi1726g00007 540 SMART dnaj_3 11 72 IPR001623 -
Gabi1726g00007 540 PRINTS DnaJ domain signature 14 32 IPR001623 -
Gabi1726g00007 540 PRINTS DnaJ domain signature 52 72 IPR001623 -
Gabi1726g00007 540 PRINTS DnaJ domain signature 32 47 IPR001623 -
Gabi1726g00007 540 PRINTS DnaJ domain signature 72 91 IPR001623 -
Gabi1726g00007 540 Gene3D DnaJ domain 1 90 IPR036869 -
Gabi1726g00007 540 Coils Coil 407 430 - -
Gabi1726g00007 540 Pfam DnaJ-like protein C11, C-terminal 386 534 IPR024586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1726g00007 Gabi-Chr1726 36869 47984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1726g00007 14 79 C2H2 Transcription Factor Family AT1G74250 44.118 3.98e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1726g00007 K09531 - gmx:100817782 924.465