Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1720g00002 ATGGGGGTGATAAAGGCAGCCATTGGAGATGCAATCTTGACATCAATATGGGTTTTTGGTATCTCAACTTTGAGGATTCTTACAGCTAAGATAGCTCTTTTTCTTGGTCTTCAACCTGTTTCACTTGTTGGCCTTTTCATCACCACAACTCTAAGCACCTTTATGGTCTTCACAATAAGCTTAATTGGCAGGGCCTTGGGTGGTGCTAGCTTCAACCCATCAACCACTGTTTCCTTCTACACTGCAGGGCTAAGACCTGATTCATCTCTTGCATCAATGGCTGTTAGATTTCCTGCTCAAGCAGCAGGTGGAGCTGTTGGTGCCAAGGTTACCTTGCTAGTGATGCCAACCAAATACAAGCACATGCTGAAAGGGCCTTCCTTGAAGGTGGACTTGCACAAAGGAGCTATAGCAGAAGGGGTGTTAACTTTTACTCTTAACTTAGTTATCCTCTTTGTCATGCTAAGGGGTCCTAAAAACCCACTATTGAAGGTGTATTTGATTGCTTTGGCAACTGTGGCTTTGGTTATTCCAGGTTCTGGGTACACTGGGCCTTCTATGAACCCAGCCAATGCCTTTGGATGGGCCTATGTGAACAACAAGCATAACACTTGGGAGCTATTTTATGTGTATTGGTTATTTCCTTTTATAGGGGCTATCTTTGCTGCTTTGGTCTACCGGTTTCTATTTATGTCACAAACCAAGAAGAAGAAAGCTTGA 720 0.4361 MGVIKAAIGDAILTSIWVFGISTLRILTAKIALFLGLQPVSLVGLFITTTLSTFMVFTISLIGRALGGASFNPSTTVSFYTAGLRPDSSLASMAVRFPAQAAGGAVGAKVTLLVMPTKYKHMLKGPSLKVDLHKGAIAEGVLTFTLNLVILFVMLRGPKNPLLKVYLIALATVALVIPGSGYTGPSMNPANAFGWAYVNNKHNTWELFYVYWLFPFIGAIFAALVYRFLFMSQTKKKKA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1720g00002 239 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1720g00002 239 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1720g00002 239 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1720g00002 239 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1720g00002 239 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1720g00002 239 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi1720g00002 239 PANTHER AQUAPORIN SIP1-1 1 238 IPR044222 GO:0015250
Gabi1720g00002 239 SUPERFAMILY Aquaporin-like 3 233 IPR023271 -
Gabi1720g00002 239 Gene3D Glycerol uptake facilitator protein. 2 239 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1720g00002 Gabi-Chr1720 44905 45950 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1720g00002 1 230 Major Intrinsic Protein MIP AT3G04090 47.826 7.72e-64 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1720g00002 K09875 - qsa:O6P43_000566 382.489