Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1718g00012 ATGGCCTTCCTTTTATTGTTCAAATCATTAATTTTGTCCCAGCTTCTTCTTCTTCTTCTTGTTTCTGCTCACGATGGAAAGTGTCCACCCTCTTTTGAATGTGGATATCTTGGGCAGATCAGTTTCCCTTTCACAATCACTCAACGCCAAGATTGTGGCGTATTGGCTATACATGGCTGTGATCTTAAGGATCCCACGGCTCCCAAAACCATCCAACTGAGCAATACAACAACAACAACAACAACACGGTTTCCTATTGTTACAAGCGTGGATTCTAAAACCATAACGATCGCAGATGATGTTCTACGGAAGAATTTGCACTCCAAAAGTTGCAAAACCTTCAACAATTATAGTCTTCCTCCCACCTCTCCTTTGGGTTCTTTCTACATCAAATATAATATAACTATGTTCAGATGCAATCACTCTCTCACTGTCACCATTCCCAAATTTTATAACTACTCAAACTGCTCCGATTACAATATCTACTACTATATCCCTCTAAATACTGCAAAAGCTCCTGGTTTCAAGTTGCCAAGCTCTTTAGCACCGTGTTCAACGATTCAGCTTCCAGTGAGAGACCAGTCTACTAGCGACCCCTTTGATTTTCTATCTCCACAGGTCTTAATTCAAGTAGAATTATCTGATGATTGCCAAAAATGTCATCGCCATCAAAGAGGCCAATGCCAACTTAACAACGAAGGAAAATTCTATTGCTTGAAAGGTATTGGACTATCTGGCATTATTATAATTGGTTTGCTGATTATATGGTACTACAAACCAAGATGTGTTCCTGGTTTCTACTCAAATCCATACCCTGAGACGGGCAGTGTTTACTTTGGGGTCCCTATCTTCTCTTATAGGGATCTTGAAGTAGCAACCAAAAAATTTGACCCTTCAAGAGAACTCGGAGAAGGAGGATTTGGAACTGTTTACTATGGAAAACTCCAAGATGGACGTGAAGTTGCCGTGAAGCGCCTATATGAGAACAACTATAGGCGAGTAGAGCAGTTCATGAATGAAATCAAGATCCTCACTCGCTTGCGCCACAGAAATCTAGTGTCCCTCTATGGCTGCACTTCACGTCACTGCCGTGAACTATTGCTTGTATATGAATACATCTCAAATGGGACTGTGGCCAGTCACCTCCATCAAGAATCAACACACCCAGGTTTTTTACCATGGCCTATCAGAATGAAAGTTGCCTTAGAGACTGCTACTGCATTGGCTTATCTCCACGCTTCTGAAATCATTCACCGTGATGTGAAAACAAACAACATTCTCCTCGACAACACATTCTGTGTTAAAGTTGCAGATTTTGGATTGTCAAGACTCTTCCCCAATGATGTCACCCATGTCTCAACAGCTCCACAAGGAACCCCAGGTTATGTGGATCCGGAATATCACCAATGCTACCAGCTTACAAGTAAGAGTGATGTGTATAGCTTTGGAGTTGTGCTTATTGAGCTAATATCATCTATGCCAGCTGTTGATATGACCAGGCATAAGGATGAGATAAACTTGGCAAATCTAGCTATAAACAAGATTCAAAAGAATGCAATTGGTGAGCTGGTAGATACTTCCCTTGGTTTTGAGTCAGATAGCGATGTTAAAAGCAAAATAGTTTCGGTGGCAGAATTGGCTTTTCAGTGTTTGCAACGGGACAAGGAACTGAGACCCTCCATGGATGAGGTTTTGGAGGTGCTGAGGAGAATTGAAAGTGGGAAGGATGAGACAGGGCATCTAGTTCATGGTGCTGCAGCGATATCACCACCTTCACCAGATCATGATGAGGTGAAATTGTTGAGGGATATGAAGTTAACACCTTCGCCCAAGGCAGTGACAGATAAATGGGATAGCGAATCCACTACTCCTAATGTCAGTGGTCAATAG 1890 0.4206 MAFLLLFKSLILSQLLLLLLVSAHDGKCPPSFECGYLGQISFPFTITQRQDCGVLAIHGCDLKDPTAPKTIQLSNTTTTTTTRFPIVTSVDSKTITIADDVLRKNLHSKSCKTFNNYSLPPTSPLGSFYIKYNITMFRCNHSLTVTIPKFYNYSNCSDYNIYYYIPLNTAKAPGFKLPSSLAPCSTIQLPVRDQSTSDPFDFLSPQVLIQVELSDDCQKCHRHQRGQCQLNNEGKFYCLKGIGLSGIIIIGLLIIWYYKPRCVPGFYSNPYPETGSVYFGVPIFSYRDLEVATKKFDPSRELGEGGFGTVYYGKLQDGREVAVKRLYENNYRRVEQFMNEIKILTRLRHRNLVSLYGCTSRHCRELLLVYEYISNGTVASHLHQESTHPGFLPWPIRMKVALETATALAYLHASEIIHRDVKTNNILLDNTFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHQCYQLTSKSDVYSFGVVLIELISSMPAVDMTRHKDEINLANLAINKIQKNAIGELVDTSLGFESDSDVKSKIVSVAELAFQCLQRDKELRPSMDEVLEVLRRIESGKDETGHLVHGAAAISPPSPDHDEVKLLRDMKLTPSPKAVTDKWDSESTTPNVSGQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1718g00012 629 ProSiteProfiles Protein kinase domain profile. 296 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00012 629 FunFam Wall-associated receptor kinase-like 20 373 580 - -
Gabi1718g00012 629 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 15 622 IPR044652 GO:0004672
Gabi1718g00012 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Gabi1718g00012 629 Gene3D Transferase(Phosphotransferase) domain 1 373 580 - -
Gabi1718g00012 629 SMART serkin_6 296 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00012 629 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Gabi1718g00012 629 Coils Coil 498 518 - -
Gabi1718g00012 629 Gene3D Phosphorylase Kinase; domain 1 273 372 - -
Gabi1718g00012 629 SUPERFAMILY Protein kinase-like (PK-like) 277 570 IPR011009 -
Gabi1718g00012 629 Pfam Protein kinase domain 299 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00012 629 MobiDBLite consensus disorder prediction 614 629 - -
Gabi1718g00012 629 MobiDBLite consensus disorder prediction 604 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1718g00012 Gabi-Chr1718 87993 90693 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1718g00012 32 628 Receptor kinase-like Gene Family AT1G25390 47.218 3.12e-171 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1718g00012 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1718g00012 - - aprc:113871893 867.84