Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1718g00011 ATGGCCTTCCTTTTATTGTTCAAATCATTAATTTTGTCCCAGCTTCTTCTTCTTCTTCTTGTTTCTGCTCACGATGGAAAGTGTCCACCCTCTTTTGAATGTGGATATCTTGGGCAGATCAGTTTCCCTTTCACAATCACTCAACGCCAAGATTGTGGCGTATTGGCTATACATGGCTGTGATCTTAAGGATCCCACGGCTCCCAAAACCATCCAACTGAGCAATACAACAACAACAACAACAACACGGTTTCCTATTGTTACAAGCGTGGATTCTAAAACCATAACGATCGCAGATGATGTTCTACGGAAGAATTTGCACTCCAAAAGTTGCAAAACCTTCAACAATTATAGTCTTCCTCCCACCTCTCCTTTGGGTTCTTTCTACATCAAATATAATATAACTATGTTCAGATGCAATCACTCTCTCACTGTCACCATTCCCAAATTTTATAACTACTCAAACTGCTCCGATTACAATATCTACTACTATATCCCTCTAAATACTGCAAAAGCTCCTGGTTTCAAGTTGCCAAGCTCTTTAGCACCGTGTTCAACGATTCAGCTTCCAGTGAGAGACCAGTCTACTAGCGACCCCTTTGATTTTCTATCTCCACAGGTCTTAATTCAAGTAGAATTATCTGATGATTGCCAAAAATGTCATCGCCATCAAAGAGGCCAATGCCAACTTAACAACGAAGGAAAATTCTATTGCTTGAAAGATGATAAAAGTTTGGCGTTGAAGTTAGGACTTGGTATTGGACTATCTGGCATTATTATAATTGGTTTGCTGATTATATGGTACTACAAACCAAGATGTGTTCCTGGTTTCTACTCAAATCCATACCCTGAGACGGGCAGTGTTTACTTTGGGGTCCCTATCTTCTCTTATAGGGATCTTGAAGTAGCAACCAAAAAATTTGACCCTTCAAGAGAACTCGGAGAAGGAGGATTTGGAACTGTTTACTATGGAAAACTCCAAGATGGACGTGAAGTTGCCGTGAAGCGCCTATATGAGAACAACTATAGGCGAGTAGAGCAGTTCATGAATGAAATCAAGATCCTCACTCGCTTGCGCCACAGAAATCTAGTGTCCCTCTATGGCTGCACTTCACGTCACTGCCGTGAACTATTGCTTGTATATGAATACATCTCAAATGGGACTGTGGCCAGTCACCTCCATCAAGAATCAACACACCCAGGTTTTTTACCATGGCCTATCAGAATGAAAGTTGCCTTAGAGACTGCTACTGCATTGGCTTATCTCCACGCTTCTGAAATCATTCACCGTGATGTGAAAACAAACAACATTCTCCTCGACAACACATTCTGTGTTAAAGTTGCAGATTTTGGATTGTCAAGACTCTTCCCCAATGATGTCACCCATGTCTCAACAGCTCCACAAGGAACCCCAGGTTATGTGGATCCGGAATATCACCAATGCTACCAGCTTACAAGTAAGAGTGATGTGTATAGCTTTGGAGTTGTGCTTATTGAGCTAATATCATCTATGCCAGCTGTTGATATGACCAGGCATAAGGATGAGATAAACTTGGCAAATCTAGCTATAAACAAGATTCAAAAGAATGCAATTGGTGAGCTGGTAGATACTTCCCTTGGTTTTGAGTCAGATAGCGATGTTAAAAGCAAAATAGTTTCGGTGGCAGAATTGGCTTTTCAGTGTTTGCAACGGGACAAGGAACTGAGACCCTCCATGGATGAGGTTTTGGAGGTGCTGAGGAGAATTGAAAGTGGGAAGGATGAGACAGGGCATCTAGTTCATGGTGCTGCAGCGATATCACCACCTTCACCAGATCATGATGAGGTGAAATTGTTGAGGGATATGAAGTTAACACCTTCGCCCAAGGCAGTGACAGATAAATGGGATAGCGAATCCACTACTCCTAATGTCAGTGGTCAATAG 1923 0.4197 MAFLLLFKSLILSQLLLLLLVSAHDGKCPPSFECGYLGQISFPFTITQRQDCGVLAIHGCDLKDPTAPKTIQLSNTTTTTTTRFPIVTSVDSKTITIADDVLRKNLHSKSCKTFNNYSLPPTSPLGSFYIKYNITMFRCNHSLTVTIPKFYNYSNCSDYNIYYYIPLNTAKAPGFKLPSSLAPCSTIQLPVRDQSTSDPFDFLSPQVLIQVELSDDCQKCHRHQRGQCQLNNEGKFYCLKDDKSLALKLGLGIGLSGIIIIGLLIIWYYKPRCVPGFYSNPYPETGSVYFGVPIFSYRDLEVATKKFDPSRELGEGGFGTVYYGKLQDGREVAVKRLYENNYRRVEQFMNEIKILTRLRHRNLVSLYGCTSRHCRELLLVYEYISNGTVASHLHQESTHPGFLPWPIRMKVALETATALAYLHASEIIHRDVKTNNILLDNTFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHQCYQLTSKSDVYSFGVVLIELISSMPAVDMTRHKDEINLANLAINKIQKNAIGELVDTSLGFESDSDVKSKIVSVAELAFQCLQRDKELRPSMDEVLEVLRRIESGKDETGHLVHGAAAISPPSPDHDEVKLLRDMKLTPSPKAVTDKWDSESTTPNVSGQ 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1718g00011 640 FunFam Wall-associated receptor kinase-like 20 384 591 - -
Gabi1718g00011 640 MobiDBLite consensus disorder prediction 616 640 - -
Gabi1718g00011 640 Coils Coil 509 529 - -
Gabi1718g00011 640 ProSiteProfiles Protein kinase domain profile. 307 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00011 640 SMART serkin_6 307 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00011 640 Gene3D Phosphorylase Kinase; domain 1 284 383 - -
Gabi1718g00011 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 15 633 IPR044652 GO:0004672
Gabi1718g00011 640 MobiDBLite consensus disorder prediction 625 640 - -
Gabi1718g00011 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Gabi1718g00011 640 Pfam Protein kinase domain 310 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00011 640 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Gabi1718g00011 640 Gene3D Transferase(Phosphotransferase) domain 1 384 591 - -
Gabi1718g00011 640 SUPERFAMILY Protein kinase-like (PK-like) 288 581 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1718g00011 Gabi-Chr1718 87993 90693 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1718g00011 32 639 Receptor kinase-like Gene Family AT1G25390 47.619 6.16e-174 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1718g00011 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1718g00011 - - aprc:113871893 862.448