Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1718g00010 ATGGCTCAAGTTGATATGTTGTGCTTCGTGTTATTAACTAACCTTGTTGTGATTTTGTCCGGTGGGTACCAACAAAACTGTCCACGCTCCTTTAATTGTGGGAACATTGGGCCTTTCCATTACCCTTTCACCAAAGCAGAACAACCACTCTGTGGCTTGCTACCAATACATAACTGTGATGGTGATTATTATTCACCCAGAAATATCCAACTGGAGATGAATGGAAAAAGCAAAGTGCTTAATGTTACGGGCATCGTTCTGCCAAATAAGATTACCCTTTTAGATGAAGATCTTCACCAGCGGTTGAAAGACCAAACTTGTGAAACATTGAACAATAATTATACTCTTTCATCCCCTTCTCCTTTGTTTTCTGTTTATATCAAATGGAACGTGACACTCTTCCGATGCAAACACGACCTCAATATCAAGCCCCCTGTAAGTTATCTTCAACACAAATGCGATGATCTCGATTTCGATATCTATTATGATGGCAGTCTCTCTCCTAATTATACTAATGAGGAGGAGGTCCATAGATTTTTCTCATCATGTTCAGCTCTTCAGTTTCCAAGTAAAGACCTCTCTGACACCAAAGACATTCAATCGTTTGTATCTAGCCAGATGGTTGTTGAAATAGTATTATCTCATGATTGTGATGAGTGCTGCCATCACAATCGAGGCCAATGTCGCCTTGACACCAATAAAAGTTTCTACTGTGACCAAGAACCAGATAGTACAAATTTAAAGCTGCTACTCGGACTTGGGATAGGTTTAAGTTTTACACTGCTATGCATTCTGATAATTGGATACTTCTTGAAACGAAAACATGCTACTTCAGACCCCCAACACCACCAATCAAGAAGCACACATACTGATGTAATTGATCCCCACTCAAATCCAGACCCAGAAGATGGCAGAGTTTACTTTGGAATCCCTCTCTTCTCTTACAAGGAGCTAGAAGAAGCTACAAATAATTTCCACCCGGCCAGACAAATTGGAAGTGGAGGCTTTGGAACAGTTTACTATGGAAAACTGCGAGATGGACGGGAAGTTGCTGTCAAGCGCTTATATGAGCACAACTACAGGAGAGTAGAACAGTTCATAAATGAAGTTGAGATCCTCACACGTTTGCGTCACATAAATCTTGTGTCCCTCTATGGCTGCACTTCACATCACAGTCAAGAACTACTGCTTGTGTATGAATATGTTCCAAATGGAACTGTTGCTTGTCATCTTCATGGGGATTTAGCAAGGTCTGGCACACTGCCTTGGCATGCAAGAATGAAAATTGCCATAGAGACAGCAAGCTCATTGGCTTATCTACATGCTTCTGACATCATACACCGTGATGTGAAAACTAAAAACCTTCTCCTTACCCACAGTTTCAGTGTTAAAGTTGCAGACTTTGGCCTTTCAAAGTTACTTCCCAGCGATGTCACCCATGCCTCCACAGCACCACAAGGGACCCCGGGTTACGTTGACCCGGAATATCACCAATGCTACCAGCTTAGTAGCAAGAGTGATGTATATAGTTTTGGAGTTGTGCTCATTGAACTAATATCATCTAAGCCTGCTGTTGACATGAGTAGGCATAGGGATGAGATTAACTTGTCAAACCTGGCCATAAAGAAGATTCAAAAAAGTGCTTTCAGTGAGCTGGTAGATCCTTCTCTTGGTTTTGATTCAGACAAAGAGGTTAAGAGGATGATAGTTTCGGTGGCAGAATTGGCTTTTCAATGTTTGCAAATGGACAAGGAATGGAGACCTTCCATGAATGAGGTTTTGAAGGTGCTGATGAGAATTGGAAGTGGGAAGGATAAACCTGAGCATCTAGAGGAAGTAGATTTACGTCCACCATCTCCACCTTCACCAGATTGTGATGAGATTGGATTATTGAAAAAAATTATGCTCACGCCTTCACCAAAAGCCGTGACTGATAGATGGGATAGTGAATCTACTACACCAAATGTCAGTGGTTCATAG 1980 0.4157 MAQVDMLCFVLLTNLVVILSGGYQQNCPRSFNCGNIGPFHYPFTKAEQPLCGLLPIHNCDGDYYSPRNIQLEMNGKSKVLNVTGIVLPNKITLLDEDLHQRLKDQTCETLNNNYTLSSPSPLFSVYIKWNVTLFRCKHDLNIKPPVSYLQHKCDDLDFDIYYDGSLSPNYTNEEEVHRFFSSCSALQFPSKDLSDTKDIQSFVSSQMVVEIVLSHDCDECCHHNRGQCRLDTNKSFYCDQEPDSTNLKLLLGLGIGLSFTLLCILIIGYFLKRKHATSDPQHHQSRSTHTDVIDPHSNPDPEDGRVYFGIPLFSYKELEEATNNFHPARQIGSGGFGTVYYGKLRDGREVAVKRLYEHNYRRVEQFINEVEILTRLRHINLVSLYGCTSHHSQELLLVYEYVPNGTVACHLHGDLARSGTLPWHARMKIAIETASSLAYLHASDIIHRDVKTKNLLLTHSFSVKVADFGLSKLLPSDVTHASTAPQGTPGYVDPEYHQCYQLSSKSDVYSFGVVLIELISSKPAVDMSRHRDEINLSNLAIKKIQKSAFSELVDPSLGFDSDKEVKRMIVSVAELAFQCLQMDKEWRPSMNEVLKVLMRIGSGKDKPEHLEEVDLRPPSPPSPDCDEIGLLKKIMLTPSPKAVTDRWDSESTTPNVSGS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1718g00010 659 MobiDBLite consensus disorder prediction 278 301 - -
Gabi1718g00010 659 Gene3D Phosphorylase Kinase; domain 1 302 401 - -
Gabi1718g00010 659 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Gabi1718g00010 659 ProSiteProfiles Protein kinase domain profile. 325 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00010 659 MobiDBLite consensus disorder prediction 644 659 - -
Gabi1718g00010 659 MobiDBLite consensus disorder prediction 640 659 - -
Gabi1718g00010 659 FunFam Wall-associated receptor kinase-like 20 402 609 - -
Gabi1718g00010 659 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 652 IPR044652 GO:0004672
Gabi1718g00010 659 SMART serkin_6 325 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00010 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Gabi1718g00010 659 SUPERFAMILY Protein kinase-like (PK-like) 307 600 IPR011009 -
Gabi1718g00010 659 Gene3D Transferase(Phosphotransferase) domain 1 402 607 - -
Gabi1718g00010 659 Pfam Protein kinase domain 326 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1718g00010 Gabi-Chr1718 79204 81708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1718g00010 29 658 Receptor kinase-like Gene Family AT1G25390 48.433 7.71e-180 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1718g00010 Pkinase 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1718g00010 - - gmx:100791822 925.235