Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1718g00008 ATGAACAAAAAGTTCCTCTTCTTTGTCCTCAAGCCCCTGATTCATTCATACATCTTCCTCTTCTATATCCAAATCAGAACCACCTCGTGTTCTCCGGATCCTAAGTTCGAAACATGTCAACCCAAAACCTGCGGCAACAACCTAACTATAAGCTACCCGTTCTACATCCTAGGAATACAAGAACCCTTTTGTGGGTACCCAGGTTTCGGTCTCTCTTGTGCCAAAAATGGTTTTCCAATCCTCAATCTGTCTAATACCCAATACATCATCGATCAAATATTCTACGACAATCGGTCACTACGAGTGTCCAATGCTGTATTTTCAATTTCAACATCAAACACCACCAAAGGTTGTCTTCCTCCCACCCAGAACCTCACACTTGCCAATAACGTGTTCCATCTTGCTCCGAACCAAAAGGACATGATATTGTTCTTCGGCTGTGACTTACAATCGCTGCCCACAGGGCTGCAAGAGCACAGAATCGGTTGTTCTGCAGAAAACGAAACGAGTTCGGTTGTGGCATTGTATAAGGATGATAAAAATCTAAGCTTTGCATCAGAAAATTGCAAGGGTGAGGTGGTGGATGCGATAGTGGAAGATGGGTATGGAGGGATTGAAGAGGCGCTGAGAAAAGGGTTCTGGTTGAATTGGACGGCCAGTGATTGCAGCTTGTGCAGAAGCACTGGAGGGAGGTGCGGCTTTGATTCTGATATATACACTTTCAGGTGCTACTGCACTGACAGAGTTCATGCTTCCGATTGTGGTCCAGCTACAGCAAAGCCAAAAAGGTTGCGTAGGAATGTCAAACTTTGTATAGGTTTAGGTGTTGGAATCCTAGGCATCTTGATAATTGGGTTGCTGTTGCTTTTTCTACTCTACAAACGAAAACATGCTACCTCAGGTGGACACTTACAATCAGGAAATTCTTATTCTGATTCCTCCTTAAATCCACGCTCAGAAAGTGGTAGTGTATACTTTGGAGTTCCACTCTTCTCCTACGAGAAGCTTAAAGAAGCAACAAACAATTTCGACCATACTAGAGAACTTGGAGATGGAGGCTTTGGTACTGTTTACTATGGGAAACTCCCAGATGGACGGGAAGTAGCTGTCAAACGCTTATATGAGCACAACTACAGGAGAGTACAACAGTTCATAAATGAAGTTGAGATCCTCACACGTTTGCGTCATAAAAATCTTGTGTCCCTCTATGGCTGCACTTCACGTCACAGCCGTGAACTACTGCTTGTGTATGAATATATTTCAAACGGTACCGTTGCTTGCCATCTCCATGGTGGATTAGCCAAGTCTGGCTTACTACCGGGGTCTTTGCGAATTAAAATTGCCATAGAAACTGCTAGTGCGTTGGCCTATCTCCATGCTTCGGGTATCATTCACCGTGATGTGAAAACCAGCAACATACTCCTTGACAGCAGTTTTTGTGTTAAAGTTGCAGATTTTGGACTCTCAAGACTATTCCCAGATGATGTCACCCATGTCTCCACGGCTCCACAAGGGACTCCAGGTTATGTTGATCCGGAATATCATCAATGTTACCAGCTTACTAACAAGAGTGATGTATACAGTTTTGGTGTTGTGCTCATTGAGCTTATATCATCTAAGCCTGCTGTTGATATAAACAGGAGTAAGGATGAGATTAACTTGTCAAATCTAGCCGTAAAGAAGATTCAAGAAAGTGCAATTGGTGAGCTGGTAGATCCTTCTATTGGTTTTGATTCAGATCAAGATGTTAAGAGGATGATGGTTTCAGTGGCAGAATTGGCTTTTCAATGTTTGCAAAGGGACAAGGAATTGAGACCTTCCATGCAAGAAGTGTTGGATGAATTGTGTAGAATTGAGAGTGGGAAAGATGAGGTGGCGCTTCAAGAGGAGGCAGATGTTCATGGTGTTGGAGTTTCTCACAGTAACGTGCATCCACCATTACTAGCTTCACCTGACTCTGATGAAGTTGGATTATTGAAAAATATGAAGCTGCCGACTTCACCGAACACTGTCACAGATAAATGGGAAAGTGAACGTACCACGCCTAATGTCAGTGGTTAA 2061 0.4333 MNKKFLFFVLKPLIHSYIFLFYIQIRTTSCSPDPKFETCQPKTCGNNLTISYPFYILGIQEPFCGYPGFGLSCAKNGFPILNLSNTQYIIDQIFYDNRSLRVSNAVFSISTSNTTKGCLPPTQNLTLANNVFHLAPNQKDMILFFGCDLQSLPTGLQEHRIGCSAENETSSVVALYKDDKNLSFASENCKGEVVDAIVEDGYGGIEEALRKGFWLNWTASDCSLCRSTGGRCGFDSDIYTFRCYCTDRVHASDCGPATAKPKRLRRNVKLCIGLGVGILGILIIGLLLLFLLYKRKHATSGGHLQSGNSYSDSSLNPRSESGSVYFGVPLFSYEKLKEATNNFDHTRELGDGGFGTVYYGKLPDGREVAVKRLYEHNYRRVQQFINEVEILTRLRHKNLVSLYGCTSRHSRELLLVYEYISNGTVACHLHGGLAKSGLLPGSLRIKIAIETASALAYLHASGIIHRDVKTSNILLDSSFCVKVADFGLSRLFPDDVTHVSTAPQGTPGYVDPEYHQCYQLTNKSDVYSFGVVLIELISSKPAVDINRSKDEINLSNLAVKKIQESAIGELVDPSIGFDSDQDVKRMMVSVAELAFQCLQRDKELRPSMQEVLDELCRIESGKDEVALQEEADVHGVGVSHSNVHPPLLASPDSDEVGLLKNMKLPTSPNTVTDKWESERTTPNVSG 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1718g00008 686 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 316 419 - -
Gabi1718g00008 686 Pfam Protein kinase domain 345 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00008 686 Pfam Wall-associated receptor kinase galacturonan-binding 39 103 IPR025287 GO:0030247
Gabi1718g00008 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Gabi1718g00008 686 SUPERFAMILY Protein kinase-like (PK-like) 324 613 IPR011009 -
Gabi1718g00008 686 MobiDBLite consensus disorder prediction 663 686 - -
Gabi1718g00008 686 Gene3D Phosphorylase Kinase; domain 1 312 419 - -
Gabi1718g00008 686 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Gabi1718g00008 686 FunFam Wall-associated receptor kinase-like 20 420 628 - -
Gabi1718g00008 686 ProSiteProfiles Protein kinase domain profile. 343 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00008 686 MobiDBLite consensus disorder prediction 662 686 - -
Gabi1718g00008 686 Pfam Wall-associated receptor kinase C-terminal 178 247 IPR032872 -
Gabi1718g00008 686 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 680 IPR044652 GO:0004672
Gabi1718g00008 686 SMART serkin_6 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1718g00008 686 Gene3D Transferase(Phosphotransferase) domain 1 420 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1718g00008 Gabi-Chr1718 58462 72078 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1718g00008 241 686 Receptor kinase-like Gene Family AT1G25390 58.114 2.14e-169 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi1718g00008 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1718g00008 - - psat:127098518 951.044