Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1716g00005 ATGGTCGATGTTCTGAGCCCCTTCACAATCACACCCCCTCCTCCACCCTCTTTCTCATCAAGCAAGAACACTAGTATGCCCATGTTATACTATGGCCTAGTTGTGGTTGGAACAACAGCAATAGTGCTAACCCTATACAACCTCATCATCATCAAACGTTGCAACAGGCGCCACACGCAGTCACAAGATACAGGACCACATGGGTTAGTTGAAGGGGTCCCTCAAAATAGAAGCTTTGAAAACCCACAAAGGAACTTGCTCTCAAGCTTCAAATACAAGAAAGAGTTGGTGGTAGCGAAAGAAGAAGATCAAGAAGAGCAAAGAGGTGATGGTGATGATTATGAATGCCCAGTTTGCTTATCAGTTTATGAAGAAGGGGAAGAGGTGAGGAAGCTACCACGGTGCAAGCACTCTTTTCATGCTATTTGTATAGACATGTGGCTTTACTCTCACTTTGATTGCCCAATTTGTAGAACACCCGTTGGGCCTTTCTTTCACCCTTTTCCGGCAGATAATTATCGTCATGTGTTGATGGAATCCGGTGGCATCTCTGTTTGA 558 0.448 MVDVLSPFTITPPPPPSFSSSKNTSMPMLYYGLVVVGTTAIVLTLYNLIIIKRCNRRHTQSQDTGPHGLVEGVPQNRSFENPQRNLLSSFKYKKELVVAKEEDQEEQRGDGDDYECPVCLSVYEEGEEVRKLPRCKHSFHAICIDMWLYSHFDCPICRTPVGPFFHPFPADNYRHVLMESGGISV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1716g00005 185 SMART ring_2 116 157 IPR001841 -
Gabi1716g00005 185 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 161 IPR044675 -
Gabi1716g00005 185 SUPERFAMILY RING/U-box 109 174 - -
Gabi1716g00005 185 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1716g00005 185 CDD RING-H2_EL5-like 115 158 - -
Gabi1716g00005 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 162 IPR013083 -
Gabi1716g00005 185 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Gabi1716g00005 185 Pfam Ring finger domain 115 158 IPR001841 -
Gabi1716g00005 185 FunFam RING-H2 finger protein ATL1 70 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1716g00005 Gabi-Chr1716 46958 47784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1716g00005 19 162 C3H Transcription Factor Family AT1G04360 35.526 4.14e-25 98.2