Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1716g00003 ATGTCGGTGAATCTGACGGCGAATGCGATTCCGGCAATAGTTGCCGGCGACGTGAACGCGAAGCCGTTGGTTCAGGTTCTGGACATTGCGTTGATCTCCAATAACAATATTTCAGAGAAGCAGAGATATCGTCTTCTGCTATCCGACGCCGTTTCGAGTCACCACGCGATGCTCGCCACTCAGCTCAACGACCGAGTCCGAACAGGCCGAGTTAAGAAAGGTTCCGTTGTTCAGCTTCTCGACTATATATGCACTCCTCTCCAGAACCGCAAGATTATTGTGGTGCTCAACATGGAAACTATAATACCTGATTGCGAGATCATTGGGAATCCGAAGTCATTTATGGATTCTGATTTACCAACTCAGAGAGTATTGCCTGATAACACTGTGGAGAATTCGTCGAGGAGAAATAATAATAATTTGGCTGCTCAAAATGCAAGTGATAATGTGCAGAATTTCAGGCCAACTGTTCAACCTCCGTACCAACCACCTCCGGTTTACAAAAGCCGTGGTGCGATTGTGAAGAATGAGGCACCTGCACGGGTCATTCCTATAGCTGCTTTGAATCCTTATCAAGGTCGATGGGCCATCAAGGCTAGGGTAACTGCTAAAGGGGATCTGCGCCGTTATAATAATGCTCGTGGAGATGGGAAAGTCTTCTCATTCGATCTCCTTGATTCTGATGGAGGTGAAATTCGAGTAACCTGCTTTAATGCTGTTGTTGATCGCTTTTATGATGCGATTGAGGTTGGTAAAGTTTACTTGATATCCAAAGGTAGCTTGAAACCTGCACAGAAGAATTTCAATCATTTGAAGAATGAATGGGAGATTCTTTTGGATTCAACTTCTACGGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAAACAGCAGTTCTCCTTCAGGCCTATCAGTGAGATAGAGAATGTTGACAGTAACTCCATCCTCGATATTATTGGGGTAGTGACATCTGTGAATCCTTCAGTGCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAATTTTGAATCTAAAGGACAGTTCTGGCAGGAGTGTTGAGCTAACACTTTGGGGCGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGTCGATACTGGGTTTTTCCCCATTTTGGCAGTCAAAGCTGGGAAGGTTAATGACTTTAGTGGAAAGTCTATAAGCTCTATTTCTACTACACAGCTTTTCATGAATCCAGATATCCCTGAGGCTCATAGCTTAAGAGACTGGTTTGATCAAGTGGGAAAAGATTCTGCTTCTCTATCCATTTCTAAGGACATTATCCCTGGAGGACCAAAGAATGAGATACGCAAAACTGTGTCTCAGATCAAGGATGAAGGTCTGGGGCGGTCAGACAAGCCAGACTGGATAACAGTGAGGGCAACCATATCATTCATCAAGACGGATACATTTTGTTATACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAATAAGAAAGTGACTAGGTCAGGAAACACGAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTTCAAGCTCAAATTCTGGATCATACTGGAATAACTTGGGTAACTGCATTCCAGGAAGCAGGGGAAGAGATTATGGGGTACTCATCAAAGGAGCTGTACTTGTTGAAGTATGAACAGCAGGATGATGAAAGGTTTGGAGAAATAATCAAGAGTAGACTCTTCAACCATTTTGTATTTAGGCTGAAAATCAAAGAGGAGTTATATGGAGATGAGCAGAAGGTGAAGATTACAGTAGTCAAGGCAGATAAGGTGAATTATTCTTCAGAGAGTGGATACATGCTTGATTTGATTTCCAAGTTTAGGCAGTAA 1884 0.4347 MSVNLTANAIPAIVAGDVNAKPLVQVLDIALISNNNISEKQRYRLLLSDAVSSHHAMLATQLNDRVRTGRVKKGSVVQLLDYICTPLQNRKIIVVLNMETIIPDCEIIGNPKSFMDSDLPTQRVLPDNTVENSSRRNNNNLAAQNASDNVQNFRPTVQPPYQPPPVYKSRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDAIEVGKVYLISKGSLKPAQKNFNHLKNEWEILLDSTSTVELCPDEDGSIPKQQFSFRPISEIENVDSNSILDIIGVVTSVNPSVPILRKNGMETQRRILNLKDSSGRSVELTLWGEFCNREGQKLQEMVDTGFFPILAVKAGKVNDFSGKSISSISTTQLFMNPDIPEAHSLRDWFDQVGKDSASLSISKDIIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDHTGITWVTAFQEAGEEIMGYSSKELYLLKYEQQDDERFGEIIKSRLFNHFVFRLKIKEELYGDEQKVKITVVKADKVNYSSESGYMLDLISKFRQ 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1716g00003 627 FunFam Replication protein A subunit 181 290 - -
Gabi1716g00003 627 FunFam Replication protein A subunit 433 625 - -
Gabi1716g00003 627 Gene3D - 438 626 IPR012340 -
Gabi1716g00003 627 Pfam OB-fold nucleic acid binding domain 196 277 IPR004365 GO:0003676
Gabi1716g00003 627 MobiDBLite consensus disorder prediction 126 162 - -
Gabi1716g00003 627 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Gabi1716g00003 627 SUPERFAMILY Nucleic acid-binding proteins 448 625 IPR012340 -
Gabi1716g00003 627 CDD RPA1_DBD_A 184 287 - -
Gabi1716g00003 627 SUPERFAMILY Nucleic acid-binding proteins 182 294 IPR012340 -
Gabi1716g00003 627 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gabi1716g00003 627 FunFam Replication protein A subunit 4 115 - -
Gabi1716g00003 627 SUPERFAMILY Nucleic acid-binding proteins 299 426 IPR012340 -
Gabi1716g00003 627 PANTHER REPLICATION FACTOR A 1, RFA1 195 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi1716g00003 627 MobiDBLite consensus disorder prediction 126 156 - -
Gabi1716g00003 627 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gabi1716g00003 627 NCBIfam replication factor-a protein 1 (rpa1) 4 624 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi1716g00003 627 Gene3D - 181 291 IPR012340 -
Gabi1716g00003 627 Gene3D - 294 432 IPR012340 -
Gabi1716g00003 627 Pfam Replication protein A OB domain 305 409 IPR031657 -
Gabi1716g00003 627 Gene3D - 3 115 IPR012340 -
Gabi1716g00003 627 CDD RPA1_DBD_C 451 624 IPR047192 -
Gabi1716g00003 627 FunFam Replication protein A subunit 294 432 - -
Gabi1716g00003 627 CDD RPA1_DBD_B 316 423 - -
Gabi1716g00003 627 Pfam Replication factor-A C terminal domain 467 616 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1716g00003 Gabi-Chr1716 25048 27869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1716g00003 26 624 Core DNA Replication Machinery Family AT2G06510 70.081 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1716g00003 K07466 - gmx:100792409 1068.91