Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1712g00007 ATGGAGCCTTTTTCTCTCAATCTCATGTTACCTGCATTTTGCTCTACATGCCTTCACCTATTTCTTCTCTTTACTTTGAACTCACTCTGGTTTGGCCAAAACACCACTGCCTCGCCATCAGGAAACGAAACTGACCATTTGGCATTGCTCAGATTCAAAGAATCAATATCCAGTGACCCATATGGAATCTTGCCCTCTTGGAATAGTTCTACACACTTTTGCAACTGGCGTGGAATCACATGCAGTCCCATGCACCAAAGAGTTACCAAGTTGAACCTACAAGGTTATCAATTGCATGGGCTCATATCTCCACAAGTTGGCAATCTCTCCTTTCTTATAAACCTCAACCTCGGAAACAACAGCTTTCACGGAAAAATCCCGCAGGAATTGGGTCGATTGTTACAACTGCAACAACTCTATCTTACCAACAACTCATTGACTGGGGTAATTCCTACAAACTTGACAAGTTGCTCTGATCTCAAAGTCTTACAATTGGCAGGGAACAATCTTATTGGCAAAATACCAATTGAAATTGCCTCTCTTCGAAAACTTCAATATTTTAGTGTTACAAAAAACAATTTAACTGGAGGAGTCCCACCCTTCATAGGGAATCTTTCATCCTTAACTTTTCTTGGGATGACTTATAATAACTTAGGAGGAGATATTCCACAAGAAATATGTCGTCTCAAAAACTTGACAGCTATAACTGCGGGAGAAAATAAATTGTCTGGTATATTTCCTTCTTGTTTTTATAATATGTCATCTCTTAGTGCAATCTCAGCTCCACAAAATATATTTAATGGGTCTCTTCCACCCAACATGTTCCTCACCCTTTCCAATCTCCAAGTATTTGCAATTGGCGGGAATCAACTCTCAGGTCCAATCCCCACTTCCATTTCAAATGCTTCTGTCCTTCAATTATTTGACATAAATGAAAACCATTTTGTAGGGCAAGTTCCAAGTCTAGGGAACCTACAAGGTCTTCGGATACTAAGTTTTTCTTTGAACAATCTAGGTGACAATTTAACAACGGATTTGGAGTTTTTAAAATCCTTGACAAACTGTAGTAAGTTGCAACTATTAGGTATAGACCACAATAAGTTTGGAGGTAGTTTGCCAAATTACTTGGGCAATTTTTCCACCCAACTCAGTCAACTATATGCTGGGGGTAATCAAATATCAGGACACATTCCTGCAGAATTAGGAAATCTAAATAGCTTAACTCTCTTGACCATGGAAAATAACCATTTTGAGGGGAATATTCCATCTACTTTTGGAAAGTTTCAGAATATGCAACTTTTAGATTTGAATGGAAATAAGTTGTCAGGAGATATGCCATCCAACATAGGTAACCTCAGTATGTTGTATTATTTGGGTTTAGAAGAAAATTTGTTAGAAGGAAATATTCCTGTAAGTATAGGAAACTGCCAAAAGTTACAATATTTAAATCTTTCCCGAAACAATCTTAGAGGAATCATACCTTTAGAGGTTTTTAGTATTTCTTCGTTAACAAGTTTACTAGACTTGTCACACAACTCATTGAGTGGTAGTCTACCTGATGAAGTGGGCCAACTAAAAAATATTGATGAGCTGGATGTCTCTGAGAATCATCTATCTGGTAATATTCCCGGAACTATTGGAGAATGCTTAAGCTTGGAGTACCTTTATTTACAAGGGAATTCCTTCAATGGAATTATACCATCCTCTTTGGCTTCACTAAAAGGTCTTCGACATTTAGACTTATCACGAAATCATTTGTTTGGATCAATTCCTGATGTTTTGCAGAATATTGCTTTCTTAGAATACTTAAATGTATCATTTAATATGTTGGATGGTGAGGTACCAACTAAAGGTGTCTTTCGAAATGCAAGTGACTTAGTAGTGACTGGAAACAACAAGCTTTGTGGAGGTGTTTCAGAGCTGCATCTACCGCCATGCCCTATCAAAGGTGACCAACATGCAAAACACCATAATTTCAGGTTGGCAGCAGCAATAGTTAGTGTAGTTGCTTTTCTTCTCATATTGTCACTCATTCTCGCTTTCTGCTGGACGAGGAAAAGAAGCAAGAAACCATCTTCTGATTCACTAACAATTGACCAGCTAGCCAATGTTTCATACCAAAATCTACACCATGGAACCGATGGTTTTTCAATAAGAAACTTGATAGGAACTGGAAGCTTTGGCTCTGTGTACAAAGGAACTATTGAGTCAGAAGACACAATTGTTGCTATAAAGGTCCTAAATCTTCAAAAGAAGGGGGCTTACAAGAGTTTCATTGCTGAATGTTATGCACTCAAAAATGTTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTCAAGCATAGATTTCAAAGGTCAAGAATTTAAAGCTCTCGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCTGCAACAGAAATTGCAGATCAGCGTAGATCAATGAACCTTGAGGAAAGGTTAAATATTATTAATGATGTTGCTTCAGCAGTTCATTATCTTCACTACGAATGTGAGCAAGCTTTCATTCATTGTGATTTGAAGCCTGGCAATGTTCTTCTTGATGATTGCATGGTAGCTCATGTGAGTGATTTTGGCCTAGCAAGATTGCTCTCAAGTGTTGGAGTCTCTGTGATGCAAAGTAGCACAATTGGAGTAGAGGGAACTATTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTGAGATGTCAATTGAAGGCGATATGTATAGTTTTGGAATTCTGATTTTAGAAATGTTAACTGCAAGGAGACCCACGGATGAAATGTTTAAAGATGGTCATACTCTCCACAATTATGTTAAAGTTACAATTTCCAATAATTTTGTGGAGATTGTAGACCCAACTATTCACCCCAATGAATTAGAAAATGAGAACCTGGGTTTTACGCATCCTAATGTAGAGAAATGTTTACTCTCTCTTTTTAGGATTGCACTTGCTTGTTCAATGGAATCACCAAAGGAAAGAATGAATATGATTGATGTCATCAAGGAACTTAATTTGATCAAAACATTCTTCCCTTGGAGGCCAACTGCATTACAACCACGCAACACTTGA 3090 0.3773 MEPFSLNLMLPAFCSTCLHLFLLFTLNSLWFGQNTTASPSGNETDHLALLRFKESISSDPYGILPSWNSSTHFCNWRGITCSPMHQRVTKLNLQGYQLHGLISPQVGNLSFLINLNLGNNSFHGKIPQELGRLLQLQQLYLTNNSLTGVIPTNLTSCSDLKVLQLAGNNLIGKIPIEIASLRKLQYFSVTKNNLTGGVPPFIGNLSSLTFLGMTYNNLGGDIPQEICRLKNLTAITAGENKLSGIFPSCFYNMSSLSAISAPQNIFNGSLPPNMFLTLSNLQVFAIGGNQLSGPIPTSISNASVLQLFDINENHFVGQVPSLGNLQGLRILSFSLNNLGDNLTTDLEFLKSLTNCSKLQLLGIDHNKFGGSLPNYLGNFSTQLSQLYAGGNQISGHIPAELGNLNSLTLLTMENNHFEGNIPSTFGKFQNMQLLDLNGNKLSGDMPSNIGNLSMLYYLGLEENLLEGNIPVSIGNCQKLQYLNLSRNNLRGIIPLEVFSISSLTSLLDLSHNSLSGSLPDEVGQLKNIDELDVSENHLSGNIPGTIGECLSLEYLYLQGNSFNGIIPSSLASLKGLRHLDLSRNHLFGSIPDVLQNIAFLEYLNVSFNMLDGEVPTKGVFRNASDLVVTGNNKLCGGVSELHLPPCPIKGDQHAKHHNFRLAAAIVSVVAFLLILSLILAFCWTRKRSKKPSSDSLTIDQLANVSYQNLHHGTDGFSIRNLIGTGSFGSVYKGTIESEDTIVAIKVLNLQKKGAYKSFIAECYALKNVRHRNLVKILTCCSSIDFKGQEFKALVFEYMTNGSLESWLHPATEIADQRRSMNLEERLNIINDVASAVHYLHYECEQAFIHCDLKPGNVLLDDCMVAHVSDFGLARLLSSVGVSVMQSSTIGVEGTIGYAPPEYGMGSEMSIEGDMYSFGILILEMLTARRPTDEMFKDGHTLHNYVKVTISNNFVEIVDPTIHPNELENENLGFTHPNVEKCLLSLFRIALACSMESPKERMNMIDVIKELNLIKTFFPWRPTALQPRNT 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1712g00007 1029 FunFam LRR receptor-like serine/threonine-protein kinase EFR 349 652 - -
Gabi1712g00007 1029 Pfam Leucine rich repeat N-terminal domain 43 82 IPR013210 -
Gabi1712g00007 1029 Gene3D Ribonuclease Inhibitor 42 200 IPR032675 -
Gabi1712g00007 1029 SUPERFAMILY Protein kinase-like (PK-like) 689 1013 IPR011009 -
Gabi1712g00007 1029 ProSiteProfiles Protein kinase domain profile. 716 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1712g00007 1029 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 798 1020 - -
Gabi1712g00007 1029 Gene3D Phosphorylase Kinase; domain 1 697 797 - -
Gabi1712g00007 1029 PANTHER OS04G0122200 PROTEIN 228 1013 - -
Gabi1712g00007 1029 Gene3D Transferase(Phosphotransferase) domain 1 798 1017 - -
Gabi1712g00007 1029 SUPERFAMILY L domain-like 381 636 - -
Gabi1712g00007 1029 SMART serkin_6 716 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1712g00007 1029 ProSiteProfiles Leucine-rich repeat profile. 478 499 IPR001611 GO:0005515
Gabi1712g00007 1029 ProSitePatterns Protein kinases ATP-binding region signature. 722 745 IPR017441 GO:0005524
Gabi1712g00007 1029 SUPERFAMILY L domain-like 42 338 - -
Gabi1712g00007 1029 Gene3D Ribonuclease Inhibitor 352 647 IPR032675 -
Gabi1712g00007 1029 Gene3D Ribonuclease Inhibitor 211 351 IPR032675 -
Gabi1712g00007 1029 Pfam Leucine rich repeat 135 194 IPR001611 GO:0005515
Gabi1712g00007 1029 Pfam Leucine rich repeat 551 610 IPR001611 GO:0005515
Gabi1712g00007 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 847 859 IPR008271 GO:0004672|GO:0006468
Gabi1712g00007 1029 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 82 348 - -
Gabi1712g00007 1029 SMART LRR_typ_2 205 229 IPR003591 -
Gabi1712g00007 1029 SMART LRR_typ_2 573 596 IPR003591 -
Gabi1712g00007 1029 SMART LRR_typ_2 428 452 IPR003591 -
Gabi1712g00007 1029 SMART LRR_typ_2 133 157 IPR003591 -
Gabi1712g00007 1029 SMART LRR_typ_2 500 525 IPR003591 -
Gabi1712g00007 1029 Pfam Protein kinase domain 718 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1712g00007 1029 FunFam LRR receptor-like serine/threonine-protein kinase EFR 687 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1712g00007 Gabi-Chr1712 92505 95736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1712g00007 42 1020 Receptor kinase-like Gene Family AT3G47570 46.138 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi1712g00007 Pkinase 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1712g00007 - - gmx:100792724 1386.32